On Wed, Jan 23, 2013 at 2:12 PM, Allan McRae <allan@archlinux.org> wrote:
On 24/01/13 00:08, arnaud gaboury wrote:
My issue maybe comes from the upgrade of glibc 2.17-2 from testing. I have now /lib --> usr/lib and lib64/ ----> usr/lib. /usr/lib64 ----> lib
Is this the expected structure after the upgrade ?
Yes
Give the complete package list of what was upgraded.
Allan
Allan, thank your help. Please find all the pacman logs in chronoligal order with some explainations. Sorry for the long logs To summarize, I first upgraded on m system. [2013-01-22 19:38] kalu: synchronized database testing [2013-01-22 19:38] kalu: synchronized database core [2013-01-22 19:38] kalu: synchronized database extra [2013-01-22 19:38] kalu: synchronized database community-testing [2013-01-22 19:38] kalu: synchronized database community [2013-01-22 19:38] kalu: synchronized database multilib-testing [2013-01-22 19:38] kalu: synchronized database multilib [2013-01-22 19:38] kalu: starting sysupgrade... [2013-01-22 19:40] kalu: Failed to commit sysupgrade transaction: conflicting files [2013-01-22 19:43] Running 'pacman -Syu' [2013-01-22 19:43] synchronizing package lists [2013-01-22 19:43] starting full system upgrade [2013-01-22 20:04] Running 'pacman -S bash' [2013-01-22 20:05] Running 'pacman -S filesystem' [2013-01-22 20:05] Running 'pacman -S glibc' [2013-01-22 20:05] call to execv failed (No such file or directory) [2013-01-22 20:05] upgraded glibc (2.17-1 -> 2.17-2) The upgrade went bad, and I made the mistake to #pacman -S glibc. It broke immediatly my filesystem. Then I log out and boot with Ubuntu Live CD. I chroot and tried many things with no sucess. My bad, as I realized this morning I mounted the wrong /dev/sdb partition as /usr . I then boot my system on fallback. Here again, I tried to finish the upgrade with no sucess. I then boot with Archiso, and couldn-t finish as execv was not found. I then downgraded glibc and filesystem, and tried again to upgrade correctly, with no sucess. [2013-01-22 23:35] Running 'pacman -Sf filesystem' [2013-01-22 23:35] warning: directory permissions differ on home/ filesystem: 555 package: 755 [2013-01-22 23:35] error: problem occurred while upgrading filesystem [2013-01-22 23:35] upgraded filesystem (2012.12-1 -> 2013.01-1) [2013-01-22 23:35] Running 'pacman -Syu' [2013-01-22 23:35] synchronizing package lists [2013-01-22 23:35] starting full system upgrade [2013-01-22 23:36] Running 'pacman -Syu' [2013-01-22 23:36] synchronizing package lists [2013-01-22 23:36] starting full system upgrade [2013-01-22 23:37] upgraded bash (4.2.042-1 -> 4.2.042-2) [2013-01-22 23:37] upgraded icu (50.1.1-1 -> 50.1.2-1) [2013-01-22 23:37] upgraded boost-libs (1.50.0-3 -> 1.50.0-4) [2013-01-22 23:37] upgraded ca-certificates (20121105-1 -> 20130119-1) [2013-01-22 23:37] upgraded cairo (1.12.8-2 -> 1.12.10-1) [2013-01-22 23:37] upgraded firefox (18.0-2 -> 18.0.1-1) [2013-01-22 23:37] upgraded gnupg (2.0.19-3 -> 2.0.19-4) [2013-01-22 23:37] upgraded gpgme (1.3.1-4 -> 1.3.1-5) [2013-01-22 23:37] upgraded gptfdisk (0.8.5-2 -> 0.8.5-3) [2013-01-22 23:37] upgraded harfbuzz (0.9.9-2 -> 0.9.9-3) [2013-01-22 23:37] upgraded imagemagick (6.8.0.7-1 -> 6.8.1.9-1) [2013-01-22 23:37] upgraded lib32-sqlite (3.7.15.1-1 -> 3.7.15.2-1) [2013-01-22 23:37] upgraded libao (1.1.0-2 -> 1.1.0-3) [2013-01-22 23:37] upgraded libreoffice-common (3.6.4-4 -> 3.6.4-5) [2013-01-22 23:37] upgraded libreoffice-base (3.6.4-4 -> 3.6.4-5) [2013-01-22 23:37] upgraded libreoffice-calc (3.6.4-4 -> 3.6.4-5) [2013-01-22 23:37] upgraded libreoffice-draw (3.6.4-4 -> 3.6.4-5) [2013-01-22 23:37] upgraded libreoffice-gnome (3.6.4-4 -> 3.6.4-5) [2013-01-22 23:37] upgraded libreoffice-impress (3.6.4-4 -> 3.6.4-5) [2013-01-22 23:37] upgraded libreoffice-math (3.6.4-4 -> 3.6.4-5) [2013-01-22 23:37] upgraded libreoffice-writer (3.6.4-4 -> 3.6.4-5) [2013-01-22 23:37] upgraded libtracker-sparql (0.14.4-2 -> 0.14.4-3) [2013-01-22 23:37] upgraded libxi (1.6.1-1 -> 1.6.2-1) [2013-01-22 23:37] >>> Updating module dependencies. Please wait ... [2013-01-22 23:37] >>> Generating initial ramdisk, using mkinitcpio. Please wait... [2013-01-22 23:37] ==> Building image from preset: 'default' [2013-01-22 23:37] -> -k /boot/vmlinuz-linux -c /etc/mkinitcpio.conf -g /boot/initramfs-linux.img [2013-01-22 23:37] ==> Starting build: 3.7.4-1-ARCH [2013-01-22 23:37] -> Running build hook: [base] [2013-01-22 23:37] -> Running build hook: [udev] [2013-01-22 23:37] -> Running build hook: [autodetect] [2013-01-22 23:37] -> Running build hook: [block] [2013-01-22 23:37] -> Running build hook: [lvm2] [2013-01-22 23:37] -> Running build hook: [filesystems] [2013-01-22 23:37] -> Running build hook: [fsck] [2013-01-22 23:37] ==> ERROR: file not found: `fsck.btrfs' [2013-01-22 23:37] ==> WARNING: No fsck helpers found. fsck will not be run on boot. [2013-01-22 23:37] -> Running build hook: [usr] [2013-01-22 23:37] -> Running build hook: [usbinput] [2013-01-22 23:37] -> Running build hook: [shutdown] [2013-01-22 23:37] -> Running build hook: [modconf] [2013-01-22 23:37] ==> Generating module dependencies [2013-01-22 23:37] ==> Creating gzip initcpio image: /boot/initramfs-linux.img [2013-01-22 23:37] ==> WARNING: errors were encountered during the build. The image may not be complete. [2013-01-22 23:37] ==> Building image from preset: 'fallback' [2013-01-22 23:37] -> -k /boot/vmlinuz-linux -c /etc/mkinitcpio.conf -g /boot/initramfs-linux-fallback.img -S autodetect [2013-01-22 23:37] ==> Starting build: 3.7.4-1-ARCH [2013-01-22 23:37] -> Running build hook: [base] [2013-01-22 23:37] -> Running build hook: [udev] [2013-01-22 23:37] -> Running build hook: [block] [2013-01-22 23:37] -> Running build hook: [lvm2] [2013-01-22 23:37] -> Running build hook: [filesystems] [2013-01-22 23:37] -> Running build hook: [fsck] [2013-01-22 23:37] -> Running build hook: [usr] [2013-01-22 23:37] -> Running build hook: [usbinput] [2013-01-22 23:37] -> Running build hook: [shutdown] [2013-01-22 23:37] -> Running build hook: [modconf] [2013-01-22 23:37] ==> Generating module dependencies [2013-01-22 23:37] ==> Creating gzip initcpio image: /boot/initramfs-linux-fallback.img [2013-01-22 23:37] ==> Image generation successful [2013-01-22 23:37] upgraded linux (3.7.2-1 -> 3.7.4-1) [2013-01-22 23:37] upgraded linux-api-headers (3.7.1-1 -> 3.7.4-1) [2013-01-22 23:37] upgraded linux-headers (3.7.2-1 -> 3.7.4-1) [2013-01-22 23:37] upgraded nettle (2.5-1 -> 2.6-1) [2013-01-22 23:37] upgraded python2-simplejson (2.6.2-1 -> 3.0.7-2) [2013-01-22 23:37] upgraded qt (4.8.4-1 -> 4.8.4-2) [2013-01-22 23:37] upgraded qtwebkit (2.3git20130115-1 -> 2.3.beta1-1) [2013-01-22 23:37] upgraded raptor (2.0.8-2 -> 2.0.8-3) [2013-01-22 23:37] upgraded ruby (1.9.3_p362-1 -> 1.9.3_p374-1) [2013-01-22 23:37] upgraded webkitgtk2 (1.10.2-1 -> 1.10.2-2) [2013-01-22 23:37] upgraded weechat (0.3.9.2-4 -> 0.4.0-1) [2013-01-22 23:37] upgraded wpa_supplicant (1.0-2 -> 2.0-1) [2013-01-22 23:37] Running 'pacman -Syu glibc' [2013-01-22 23:37] synchronizing package lists [2013-01-22 23:37] starting full system upgrade [2013-01-22 23:38] Generating locales... [2013-01-22 23:38] en_US.UTF-8... done [2013-01-22 23:38] fr_CH.UTF-8... done [2013-01-22 23:38] fr_FR.UTF-8... done [2013-01-22 23:38] fr_FR.ISO-8859-15@euro... done [2013-01-22 23:38] Generation complete. [2013-01-22 23:38] upgraded glibc (2.17-2 -> 2.17-2) [2013-01-22 23:42] Running 'pacman -Syu -r /mnt/arch glibc filesystem linux' [2013-01-22 23:42] synchronizing package lists [2013-01-22 23:45] Running 'pacman -Syu -r /mnt/arch glibc filesystem linux' [2013-01-22 23:45] synchronizing package lists [2013-01-22 23:45] starting full system upgrade Finally this morning I managed to finish everything. BUT I still can not boot in my Arch. [2013-01-23 09:21] Running 'pacman -Syy -r /mnt' [2013-01-23 09:21] synchronizing package lists [2013-01-23 09:28] Running 'pacman -Syu -r /mnt linux glibc filesystem' [2013-01-23 09:28] synchronizing package lists [2013-01-23 09:28] starting full system upgrade [2013-01-23 09:29] >>> Updating module dependencies. Please wait ... [2013-01-23 09:29] >>> Generating initial ramdisk, using mkinitcpio. Please wait... [2013-01-23 09:29] ==> ERROR: /proc must be mounted! [2013-01-23 09:29] upgraded linux (3.7.4-1 -> 3.7.4-1) [2013-01-23 09:29] Generating locales... [2013-01-23 09:29] en_US.UTF-8... done [2013-01-23 09:29] fr_CH.UTF-8... done [2013-01-23 09:29] fr_FR.UTF-8... done [2013-01-23 09:29] fr_FR.ISO-8859-15@euro... done [2013-01-23 09:29] Generation complete. [2013-01-23 09:29] upgraded glibc (2.17-2 -> 2.17-2) [2013-01-23 09:29] error: problem occurred while upgrading filesystem [2013-01-23 09:29] upgraded filesystem (2013.01-1 -> 2013.01-1) [2013-01-23 09:31] Running 'pacman -Syu -r /mnt linux glibc filesystem' [2013-01-23 09:31] synchronizing package lists [2013-01-23 09:31] starting full system upgrade [2013-01-23 09:32] >>> Updating module dependencies. Please wait ... [2013-01-23 09:32] >>> Generating initial ramdisk, using mkinitcpio. Please wait... [2013-01-23 09:32] ==> Building image from preset: 'default' [2013-01-23 09:32] -> -k /boot/vmlinuz-linux -c /etc/mkinitcpio.conf -g /boot/initramfs-linux.img [2013-01-23 09:32] ==> Starting build: 3.7.4-1-ARCH [2013-01-23 09:32] -> Running build hook: [base] [2013-01-23 09:32] -> Running build hook: [udev] [2013-01-23 09:32] -> Running build hook: [autodetect] [2013-01-23 09:32] -> Running build hook: [block] [2013-01-23 09:32] -> Running build hook: [lvm2] [2013-01-23 09:32] -> Running build hook: [filesystems] [2013-01-23 09:32] -> Running build hook: [fsck] [2013-01-23 09:32] ==> ERROR: file not found: `fsck.btrfs' [2013-01-23 09:32] ==> WARNING: No fsck helpers found. fsck will not be run on boot. [2013-01-23 09:32] -> Running build hook: [usr] [2013-01-23 09:32] -> Running build hook: [usbinput] [2013-01-23 09:32] -> Running build hook: [shutdown] [2013-01-23 09:32] -> Running build hook: [modconf] [2013-01-23 09:32] ==> Generating module dependencies [2013-01-23 09:32] ==> Creating gzip initcpio image: /boot/initramfs-linux.img [2013-01-23 09:32] ==> WARNING: errors were encountered during the build. The image may not be complete. [2013-01-23 09:32] ==> Building image from preset: 'fallback' [2013-01-23 09:32] -> -k /boot/vmlinuz-linux -c /etc/mkinitcpio.conf -g /boot/initramfs-linux-fallback.img -S autodetect [2013-01-23 09:32] ==> Starting build: 3.7.4-1-ARCH [2013-01-23 09:32] -> Running build hook: [base] [2013-01-23 09:32] -> Running build hook: [udev] [2013-01-23 09:32] -> Running build hook: [block] [2013-01-23 09:32] -> Running build hook: [lvm2] [2013-01-23 09:32] -> Running build hook: [filesystems] [2013-01-23 09:32] -> Running build hook: [fsck] [2013-01-23 09:32] -> Running build hook: [usr] [2013-01-23 09:32] -> Running build hook: [usbinput] [2013-01-23 09:32] -> Running build hook: [shutdown] [2013-01-23 09:32] -> Running build hook: [modconf] [2013-01-23 09:32] ==> Generating module dependencies [2013-01-23 09:32] ==> Creating gzip initcpio image: /boot/initramfs-linux-fallback.img [2013-01-23 09:32] ==> Image generation successful [2013-01-23 09:32] upgraded linux (3.7.4-1 -> 3.7.4-1) [2013-01-23 09:32] Generating locales... [2013-01-23 09:32] en_US.UTF-8... done [2013-01-23 09:32] fr_CH.UTF-8... done [2013-01-23 09:32] fr_FR.UTF-8... done [2013-01-23 09:32] fr_FR.ISO-8859-15@euro... done [2013-01-23 09:32] Generation complete. [2013-01-23 09:32] upgraded glibc (2.17-2 -> 2.17-2) [2013-01-23 09:32] error: problem occurred while upgrading filesystem [2013-01-23 09:32] upgraded filesystem (2013.01-1 -> 2013.01-1) [2013-01-23 09:32] Running 'pacman -Syu -r /mnt linux' [2013-01-23 09:32] synchronizing package lists [2013-01-23 09:32] starting full system upgrade [2013-01-23 09:32] >>> Updating module dependencies. Please wait ... [2013-01-23 09:32] >>> Generating initial ramdisk, using mkinitcpio. Please wait... [2013-01-23 09:32] ==> Building image from preset: 'default' [2013-01-23 09:32] -> -k /boot/vmlinuz-linux -c /etc/mkinitcpio.conf -g /boot/initramfs-linux.img [2013-01-23 09:32] ==> Starting build: 3.7.4-1-ARCH [2013-01-23 09:32] -> Running build hook: [base] [2013-01-23 09:32] -> Running build hook: [udev] [2013-01-23 09:32] -> Running build hook: [autodetect] [2013-01-23 09:32] -> Running build hook: [block] [2013-01-23 09:32] -> Running build hook: [lvm2] [2013-01-23 09:32] -> Running build hook: [filesystems] [2013-01-23 09:32] -> Running build hook: [fsck] [2013-01-23 09:32] ==> ERROR: file not found: `fsck.btrfs' [2013-01-23 09:32] ==> WARNING: No fsck helpers found. fsck will not be run on boot. [2013-01-23 09:32] -> Running build hook: [usr] [2013-01-23 09:32] -> Running build hook: [usbinput] [2013-01-23 09:32] -> Running build hook: [shutdown] [2013-01-23 09:32] -> Running build hook: [modconf] [2013-01-23 09:32] ==> Generating module dependencies [2013-01-23 09:32] ==> Creating gzip initcpio image: /boot/initramfs-linux.img [2013-01-23 09:32] ==> WARNING: errors were encountered during the build. The image may not be complete. [2013-01-23 09:32] ==> Building image from preset: 'fallback' [2013-01-23 09:32] -> -k /boot/vmlinuz-linux -c /etc/mkinitcpio.conf -g /boot/initramfs-linux-fallback.img -S autodetect [2013-01-23 09:32] ==> Starting build: 3.7.4-1-ARCH [2013-01-23 09:32] -> Running build hook: [base] [2013-01-23 09:32] -> Running build hook: [udev] [2013-01-23 09:32] -> Running build hook: [block] [2013-01-23 09:32] -> Running build hook: [lvm2] [2013-01-23 09:32] -> Running build hook: [filesystems] [2013-01-23 09:32] -> Running build hook: [fsck] [2013-01-23 09:32] -> Running build hook: [usr] [2013-01-23 09:32] -> Running build hook: [usbinput] [2013-01-23 09:32] -> Running build hook: [shutdown] [2013-01-23 09:32] -> Running build hook: [modconf] [2013-01-23 09:32] ==> Generating module dependencies [2013-01-23 09:32] ==> Creating gzip initcpio image: /boot/initramfs-linux-fallback.img [2013-01-23 09:33] ==> Image generation successful [2013-01-23 09:33] upgraded linux (3.7.4-1 -> 3.7.4-1) [2013-01-23 09:33] Running 'pacman -Syu -r /mnt filesystem' [2013-01-23 09:33] synchronizing package lists [2013-01-23 09:33] starting full system upgrade [2013-01-23 09:33] error: problem occurred while upgrading filesystem [2013-01-23 09:33] upgraded filesystem (2013.01-1 -> 2013.01-1) [2013-01-23 09:33] Running 'pacman -Sf -r /mnt filesystem' [2013-01-23 09:33] error: problem occurred while upgrading filesystem [2013-01-23 09:33] upgraded filesystem (2013.01-1 -> 2013.01-1) [2013-01-23 09:37] Running 'pacman -U -r /mnt ./glibc-2.17-1-x86_64.pkg.tar.xz' [2013-01-23 09:38] Running 'pacman -U -r /mnt ./glibc-2.17-1-x86_64.pkg.tar.xz' [2013-01-23 09:39] Running 'pacman -U -r /mnt ./glibc-2.17-1-x86_64.pkg.tar.xz' [2013-01-23 09:39] Generating locales... [2013-01-23 09:39] en_US.UTF-8... done [2013-01-23 09:39] fr_CH.UTF-8... done [2013-01-23 09:39] fr_FR.UTF-8... done [2013-01-23 09:39] fr_FR.ISO-8859-15@euro... done [2013-01-23 09:39] Generation complete. [2013-01-23 09:39] upgraded glibc (2.17-2 -> 2.17-1) [2013-01-23 09:40] Running 'pacman -U -r /mnt ./filesystem-2012.12-1-any.pkg.tar.xz' [2013-01-23 09:40] call to execv failed (No such file or directory) [2013-01-23 09:40] upgraded filesystem (2013.01-1 -> 2012.12-1) [2013-01-23 09:42] Running 'pacman -U -r /mnt ./filesystem-2012.12-1-any.pkg.tar.xz' [2013-01-23 09:42] call to execv failed (No such file or directory) [2013-01-23 09:42] upgraded filesystem (2012.12-1 -> 2012.12-1) [2013-01-23 09:43] Running 'pacman -Syu -r /mnt filesystem glibc' [2013-01-23 09:43] synchronizing package lists [2013-01-23 09:43] starting full system upgrade [2013-01-23 09:45] Running 'pacman -Syu -r /mnt filesystem glibc' [2013-01-23 09:45] synchronizing package lists [2013-01-23 09:45] starting full system upgrade [2013-01-23 10:08] Running 'pacman -Syu -r /mnt filesystem glibc' [2013-01-23 10:08] synchronizing package lists [2013-01-23 10:08] starting full system upgrade [2013-01-23 12:45] Running 'pacman -Syu -r /mnt filesystem glibc' [2013-01-23 12:45] synchronizing package lists [2013-01-23 12:45] starting full system upgrade [2013-01-23 12:45] upgraded filesystem (2012.12-1 -> 2013.01-1) [2013-01-23 12:45] Generating locales... [2013-01-23 12:45] en_US.UTF-8... done [2013-01-23 12:45] fr_CH.UTF-8... done [2013-01-23 12:45] fr_FR.UTF-8... done [2013-01-23 12:45] fr_FR.ISO-8859-15@euro... done [2013-01-23 12:45] Generation complete. [2013-01-23 12:45] upgraded glibc (2.17-1 -> 2.17-2) [2013-01-23 12:45] upgraded cairo (1.12.10-1 -> 1.12.10-2) [2013-01-23 12:45] upgraded cracklib (2.8.19-1 -> 2.8.22-1) [2013-01-23 14:48] Running 'pacman -Syu' [2013-01-23 14:48] synchronizing package lists [2013-01-23 14:48] starting full system upgrade [2013-01-23 15:03] Running 'pacman -Syu glibc filesystem' [2013-01-23 15:03] synchronizing package lists [2013-01-23 15:03] starting full system upgrade [2013-01-23 15:03] Generating locales... [2013-01-23 15:03] en_US.UTF-8... done [2013-01-23 15:03] fr_CH.UTF-8... done [2013-01-23 15:03] fr_FR.UTF-8... done [2013-01-23 15:03] fr_FR.ISO-8859-15@euro... done [2013-01-23 15:03] Generation complete. [2013-01-23 15:03] upgraded glibc (2.17-2 -> 2.17-2) [2013-01-23 15:03] warning: directory permissions differ on sys/ filesystem: 755 package: 555 [2013-01-23 15:03] upgraded filesystem (2013.01-1 -> 2013.01-1)