What's with the "scitools" variable? Doesn't seem to do anything useful. Deleted.
source and checksum arrays support architecture specific arrays now. Check the man page/wiki page. I known about it, but I think that it will be shorter.
You shouldn't be changing anything in $srcdir in the package function. What happens when someone runs makepkg --repackage? Corrected.
There's really no reason to change the name of the license file. Corrected.
"install -d "$pkgdir/usr/bin"" doesn't really do anything since you're using the -D option on the next line. That will create the dir. Corrected.
You should be consistent with how you use variables. Sometimes you have them in braces and sometimes you don't, even in the same path. Corrected.
I can share my PKGBUILD now? P.S. I have not received a reply. I waited digest and copied ID message to In-Reply-To. I hope this will works. So it should be? And sorry for my EnGlIsH.