[arch-commits] Commit in emboss/repos (extra-i686 extra-i686/PKGBUILD)
Ronald van Haren
ronald at archlinux.org
Thu Oct 30 23:02:42 UTC 2008
Date: Thursday, October 30, 2008 @ 19:02:42
Author: ronald
Revision: 17547
Merged revisions 356,17545 via svnmerge from
svn+ssh://archlinux.org/home/svn-packages/emboss/trunk
........
r356 | aaron | 2008-04-19 00:56:27 +0200 (Sat, 19 Apr 2008) | 1 line
Added svn:keywords to all PKGBUILDs
........
r17545 | ronald | 2008-10-30 23:50:42 +0100 (Thu, 30 Oct 2008) | 1 line
upgpkg: emboss 6.0.1-1
........
Modified:
emboss/repos/extra-i686/ (properties)
emboss/repos/extra-i686/PKGBUILD
----------+
PKGBUILD | 13 ++++++-------
1 file changed, 6 insertions(+), 7 deletions(-)
Property changes on: emboss/repos/extra-i686
___________________________________________________________________
Name: svnmerge-integrated
- /emboss/trunk:1
+ /emboss/trunk:1-17546
Modified: extra-i686/PKGBUILD
===================================================================
--- extra-i686/PKGBUILD 2008-10-30 22:52:15 UTC (rev 17546)
+++ extra-i686/PKGBUILD 2008-10-30 23:02:42 UTC (rev 17547)
@@ -2,24 +2,23 @@
# Maintainer: damir <damir at archlinux.org>
pkgname=emboss
orgname=EMBOSS
-pkgver=5.0.0
+pkgver=6.0.1
pkgrel=1
pkgdesc="A collection of molecular biology applications"
arch=(i686 x86_64)
url="http://emboss.sourceforge.net/"
-depends=('gd' 'libx11' 'pcre' 'perl' 'jre')
-makedepends=('jdk')
+depends=('gd' 'libx11' 'pcre' 'perl' 'openjdk6')
options=("!libtool")
license=('GPL2')
source=(ftp://emboss.open-bio.org/pub/EMBOSS/$orgname-$pkgver.tar.gz)
-md5sums=('be4c895220ad34afd65d450ba7d8e34b')
+md5sums=('2182b148dace6bea403deed8facae40d')
build() {
cd $startdir/src/$orgname-$pkgver
- source /etc/profile.d/jdk.sh
- CFLAGS="${CFLAGS} -I/opt/java/include"
+# source /etc/profile.d/jdk.sh
+ CFLAGS="${CFLAGS} -I/usr/lib/jvm/java-1.6.0-openjdk/include/"
./configure --prefix=/usr --enable-large --with-x \
- --with-javaos=/opt/java/include/linux/ --with-java=/opt/java/
+ --with-javaos=/usr/lib/jvm/java-1.6.0-openjdk/include//linux/
make || return 1
make prefix=$startdir/pkg/usr install
rm -f $startdir/pkg/usr/include/{pcre,pcreposix}.h
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