[arch-commits] Commit in sage-mathematics/repos (10 files)
Evgeniy Alekseev
arcanis at nymeria.archlinux.org
Sun Dec 8 08:41:02 UTC 2013
Date: Sunday, December 8, 2013 @ 09:41:02
Author: arcanis
Revision: 102310
archrelease: copy trunk to community-staging-i686, community-staging-x86_64
Added:
sage-mathematics/repos/community-staging-i686/
sage-mathematics/repos/community-staging-i686/PKGBUILD
(from rev 102309, sage-mathematics/trunk/PKGBUILD)
sage-mathematics/repos/community-staging-i686/fix-atlas.patch
(from rev 102309, sage-mathematics/trunk/fix-atlas.patch)
sage-mathematics/repos/community-staging-i686/sage-mathematics.install
(from rev 102309, sage-mathematics/trunk/sage-mathematics.install)
sage-mathematics/repos/community-staging-i686/sage.service
(from rev 102309, sage-mathematics/trunk/sage.service)
sage-mathematics/repos/community-staging-x86_64/
sage-mathematics/repos/community-staging-x86_64/PKGBUILD
(from rev 102309, sage-mathematics/trunk/PKGBUILD)
sage-mathematics/repos/community-staging-x86_64/fix-atlas.patch
(from rev 102309, sage-mathematics/trunk/fix-atlas.patch)
sage-mathematics/repos/community-staging-x86_64/sage-mathematics.install
(from rev 102309, sage-mathematics/trunk/sage-mathematics.install)
sage-mathematics/repos/community-staging-x86_64/sage.service
(from rev 102309, sage-mathematics/trunk/sage.service)
---------------------------------------------------+
community-staging-i686/PKGBUILD | 139 ++++++++++++++++++++
community-staging-i686/fix-atlas.patch | 10 +
community-staging-i686/sage-mathematics.install | 60 ++++++++
community-staging-i686/sage.service | 8 +
community-staging-x86_64/PKGBUILD | 139 ++++++++++++++++++++
community-staging-x86_64/fix-atlas.patch | 10 +
community-staging-x86_64/sage-mathematics.install | 60 ++++++++
community-staging-x86_64/sage.service | 8 +
8 files changed, 434 insertions(+)
Copied: sage-mathematics/repos/community-staging-i686/PKGBUILD (from rev 102309, sage-mathematics/trunk/PKGBUILD)
===================================================================
--- community-staging-i686/PKGBUILD (rev 0)
+++ community-staging-i686/PKGBUILD 2013-12-08 08:41:02 UTC (rev 102310)
@@ -0,0 +1,139 @@
+# $Id$
+# Maintainer: Evgeniy Alekseev <arcanis.arch at gmail dot com>
+# Contributor: Daniel Wallace <danielwallace at gtmanfred dot com>
+# Contributor: Antonio Rojas <nqn1976 at gmail dot com>
+# Contributor: Thomas Dziedzic <gostrc at gmail dot com>
+# Contributor: Osman Ugus <ugus11 at yahoo dot com>
+# Contributor: Stefan Husmann <stefan-husmann at t-online dot de>
+# Special thanks to Nareto for moving the compile from the .install to the PKGBUILD
+
+pkgname=sage-mathematics
+pkgver=5.12
+pkgrel=2
+pkgdesc="SAGE: Open Source Mathematics Software, a viable free alternative to Magma, Maple, Mathematica, and Matlab"
+arch=('i686' 'x86_64')
+url="http://www.sagemath.org"
+license=('GPL')
+#depends=('desktop-file-utils' 'java-environment=7' 'libjpeg-turbo' 'libtiff' 'libxmu' 'sqlite' 'xz')
+makedepends=('gcc-fortran' 'freetype2' 'gendesk' 'desktop-file-utils')
+optdepends=('imagemagick: some plotting functionality benefits from it'
+ 'texlive-core: some plotting functionality benefits from it, also to use SageTeX'
+ 'openssh: to use the notebook in secure mode'
+ 'ffmpeg: to show animations'
+ 'cairo: R plots')
+source=("http://sage.math.washington.edu/home/release/sage-${pkgver}/sage-${pkgver}.tar"
+ 'fix-atlas.patch'
+ 'sage.service')
+install="${pkgname}.install"
+md5sums=('21d62a8a61e351c3c124167b3eead46f'
+ '527a621b19dd93941cd018d2c1559f96'
+ '985da1c1d1dcdc3ea9aa73035cb7996b')
+
+prepare() {
+ # create *.desktop file
+ gendesk -n \
+ --pkgname="SAGE-notebook" \
+ --pkgdesc="SAGE notebook" \
+ --name="SAGE" \
+ --exec="/opt/sage/sage -notebook" \
+ --terminal=true \
+ --categories="Science;Math" \
+ --custom="StartupNotify=true
+X-DCOP-ServiceType=
+X-KDE-SubstituteUID=false
+X-KDE-Username="
+
+ # fix ATLAS build http://sourceforge.net/p/math-atlas/discussion/75123/thread/dc45bb67/
+ cd "sage-${pkgver}/spkg/standard"
+ tar xjf atlas-3.10.1.p5.spkg
+ rm atlas-3.10.1.p5.spkg
+ cd atlas-3.10.1.p5
+ patch -p0 -i "${srcdir}/fix-atlas.patch"
+ cd ..
+ tar cjf atlas-3.10.1.p5.spkg atlas-3.10.1.p5
+ rm -r atlas-3.10.1.p5
+
+ # create DOT_SAGE directory
+ if [[ -d ${srcdir}/build ]]; then
+ rm -rf "${srcdir}/build"
+ fi
+ mkdir "${srcdir}/build"
+}
+
+build() {
+ cd "sage-${pkgver}"
+
+ # fix "missing sage.all error" during build
+ unset CFLAGS
+ unset CXXFLAGS
+ # fix build errors
+ unset LDFLAGS
+
+ export MAKE="make -j$(nproc)"
+
+ # use archlinux's fortran rather then the one that ships with sage to compile sage's fortran
+ export FC=/usr/bin/gfortran
+
+ # disable building with debugging support
+ export SAGE_DEBUG='no'
+
+ # enable fat binaries (disables processor specific optimizations)
+ # comment out if you're only building it for yourself
+ export SAGE_FAT_BINARY='yes'
+
+ # can't write to root in a clean chroot
+ export DOT_SAGE="${srcdir}/build"
+
+ # singular is broken
+ export CPP='/usr/bin/cpp'
+
+ # only build sage, no documents
+ #make build
+ make
+ ./sage --bdist "${pkgver}"
+}
+
+<< COMMENT
+check() {
+ cd "sage-${pkgver}"
+
+ make test
+
+ # uncomment if we want to run all the tests (warning: very long)
+ #make ptestlong
+}
+COMMENT
+
+package() {
+ cd "sage-${pkgver}"
+
+ # cp because make install is experimental and will corrupt the install
+ install -d "${pkgdir}/opt/sage"
+ cp -dpr --no-preserve=ownership dist/sage-"${pkgver}-$CARCH-Linux/"* "${pkgdir}/opt/sage/"
+
+ # move SageTeX files to more appropriate directory
+ install -d "${pkgdir}/usr/share"
+ mv "${pkgdir}/opt/sage/local/share/texmf" "${pkgdir}/usr/share"
+
+ # create link to main binary
+ install -d "${pkgdir}/usr/bin"
+ ln -s "/opt/sage/sage" "${pkgdir}/usr/bin/sage"
+
+ # remove build logs
+ rm -f "${pkgdir}/opt/sage/*.log"
+ rm -rf "${pkgdir}/opt/sage/spkg/logs"
+
+ # remove source packages, since they are rarely needed, they are 300mb in size (compressed)
+ rm -f "${pkgdir}/opt/sage/spkg/base/*spkg"
+ rm -f "${pkgdir}/opt/sage/spkg/standard/*spkg"
+
+ # install a systemd user unit
+ install -Dm644 "${srcdir}/sage.service" "${pkgdir}/usr/lib/systemd/user/sage.service"
+ # install *.desktop and icon files
+ install -Dm644 "${srcdir}/SAGE-notebook.desktop" \
+ "${pkgdir}/usr/share/applications/SAGE-notebook.desktop"
+ install -Dm644 "${pkgdir}/opt/sage/devel/sagenb-main/sagenb/data/sage/images/icon128x128.png" \
+ "${pkgdir}/usr/share/pixmaps/SAGE-notebook.png"
+}
+
+# vim :set ts=2 sw=2 et:
Copied: sage-mathematics/repos/community-staging-i686/fix-atlas.patch (from rev 102309, sage-mathematics/trunk/fix-atlas.patch)
===================================================================
--- community-staging-i686/fix-atlas.patch (rev 0)
+++ community-staging-i686/fix-atlas.patch 2013-12-08 08:41:02 UTC (rev 102310)
@@ -0,0 +1,10 @@
+--- spkg-install 2013-08-30 21:57:13.000000000 +0200
++++ spkg-install.new 2013-10-11 23:40:10.772191176 +0200
+@@ -296,6 +296,7 @@
+ cmd += ' --prefix=' + conf['SAGE_LOCAL']
+ cmd += ' --with-netlib-lapack-tarfile=' + LAPACK_TARFILE
+ cmd += ' --cc="' + CC + '"'
++ cmd += ' -D c -DWALL'
+
+ ## -Si latune 1: enable lapack tuning
+ ## typically adds 3-4 hours of install time
Copied: sage-mathematics/repos/community-staging-i686/sage-mathematics.install (from rev 102309, sage-mathematics/trunk/sage-mathematics.install)
===================================================================
--- community-staging-i686/sage-mathematics.install (rev 0)
+++ community-staging-i686/sage-mathematics.install 2013-12-08 08:41:02 UTC (rev 102310)
@@ -0,0 +1,60 @@
+post_install() {
+ cd /opt/sage
+ update-desktop-database -q
+
+ # set HOME because when sage updates its sage_root (after being moved) it will write files to ~/.sage with root ownership
+ # the files it writes to ~/.sage can be safely ignored
+ HOME=/tmp ./sage -c
+
+ # add sagemath user for the daemon
+ useradd -r -c 'Sage daemon' -d /opt/sage -s /bin/false sagemath
+
+ # Update LaTeX db to point to SageTeX
+ if [ -f /usr/bin/texhash ]; then
+ /usr/bin/texhash /usr/share/texmf
+ else
+ echo 'Warning: could not find /usr/bin/texhash'
+ echo 'SageTeX has been installed but you need to run:'
+ echo '# texhash /usr/share/texmf'
+ echo 'So that LaTeX will be able to find it.'
+ fi
+
+echo '
+ ___
+/ (_) o |
+\__ _ _ __ |
+/ / |/ | | / \_| | |
+\___/ | |_/|/\__/ \_/|/o
+ /| /|
+ \| \|
+ ________________________________
+< sage-mathematics, I mean, MOO! >
+ --------------------------------
+ \ ^__^
+ \ (oo)\_______
+ (__)\ )\/\
+ ||----w |
+ || ||
+'
+
+}
+
+post_upgrade() {
+ post_install $1
+ echo "There is now a user session unit included to run a sage notebook as your user."
+ echo "The wiki includes a guide on starting systemd user sessions"
+}
+
+post_remove() {
+ # Update LaTeX db to remove SageTeX entries
+ update-desktop-database -q
+ if [ -f /usr/bin/texhash ]; then
+ /usr/bin/texhash /usr/share/texmf
+ fi
+
+ # remove the sagemath daemon user
+ userdel sagemath
+
+ # clean up left overs
+ rm -rf /opt/sage
+}
Copied: sage-mathematics/repos/community-staging-i686/sage.service (from rev 102309, sage-mathematics/trunk/sage.service)
===================================================================
--- community-staging-i686/sage.service (rev 0)
+++ community-staging-i686/sage.service 2013-12-08 08:41:02 UTC (rev 102310)
@@ -0,0 +1,8 @@
+[Unit]
+Description=A free open-source mathematics software system
+
+[Service]
+ExecStart=/opt/sage/sage -n
+
+[Install]
+WantedBy=default.target
Copied: sage-mathematics/repos/community-staging-x86_64/PKGBUILD (from rev 102309, sage-mathematics/trunk/PKGBUILD)
===================================================================
--- community-staging-x86_64/PKGBUILD (rev 0)
+++ community-staging-x86_64/PKGBUILD 2013-12-08 08:41:02 UTC (rev 102310)
@@ -0,0 +1,139 @@
+# $Id$
+# Maintainer: Evgeniy Alekseev <arcanis.arch at gmail dot com>
+# Contributor: Daniel Wallace <danielwallace at gtmanfred dot com>
+# Contributor: Antonio Rojas <nqn1976 at gmail dot com>
+# Contributor: Thomas Dziedzic <gostrc at gmail dot com>
+# Contributor: Osman Ugus <ugus11 at yahoo dot com>
+# Contributor: Stefan Husmann <stefan-husmann at t-online dot de>
+# Special thanks to Nareto for moving the compile from the .install to the PKGBUILD
+
+pkgname=sage-mathematics
+pkgver=5.12
+pkgrel=2
+pkgdesc="SAGE: Open Source Mathematics Software, a viable free alternative to Magma, Maple, Mathematica, and Matlab"
+arch=('i686' 'x86_64')
+url="http://www.sagemath.org"
+license=('GPL')
+#depends=('desktop-file-utils' 'java-environment=7' 'libjpeg-turbo' 'libtiff' 'libxmu' 'sqlite' 'xz')
+makedepends=('gcc-fortran' 'freetype2' 'gendesk' 'desktop-file-utils')
+optdepends=('imagemagick: some plotting functionality benefits from it'
+ 'texlive-core: some plotting functionality benefits from it, also to use SageTeX'
+ 'openssh: to use the notebook in secure mode'
+ 'ffmpeg: to show animations'
+ 'cairo: R plots')
+source=("http://sage.math.washington.edu/home/release/sage-${pkgver}/sage-${pkgver}.tar"
+ 'fix-atlas.patch'
+ 'sage.service')
+install="${pkgname}.install"
+md5sums=('21d62a8a61e351c3c124167b3eead46f'
+ '527a621b19dd93941cd018d2c1559f96'
+ '985da1c1d1dcdc3ea9aa73035cb7996b')
+
+prepare() {
+ # create *.desktop file
+ gendesk -n \
+ --pkgname="SAGE-notebook" \
+ --pkgdesc="SAGE notebook" \
+ --name="SAGE" \
+ --exec="/opt/sage/sage -notebook" \
+ --terminal=true \
+ --categories="Science;Math" \
+ --custom="StartupNotify=true
+X-DCOP-ServiceType=
+X-KDE-SubstituteUID=false
+X-KDE-Username="
+
+ # fix ATLAS build http://sourceforge.net/p/math-atlas/discussion/75123/thread/dc45bb67/
+ cd "sage-${pkgver}/spkg/standard"
+ tar xjf atlas-3.10.1.p5.spkg
+ rm atlas-3.10.1.p5.spkg
+ cd atlas-3.10.1.p5
+ patch -p0 -i "${srcdir}/fix-atlas.patch"
+ cd ..
+ tar cjf atlas-3.10.1.p5.spkg atlas-3.10.1.p5
+ rm -r atlas-3.10.1.p5
+
+ # create DOT_SAGE directory
+ if [[ -d ${srcdir}/build ]]; then
+ rm -rf "${srcdir}/build"
+ fi
+ mkdir "${srcdir}/build"
+}
+
+build() {
+ cd "sage-${pkgver}"
+
+ # fix "missing sage.all error" during build
+ unset CFLAGS
+ unset CXXFLAGS
+ # fix build errors
+ unset LDFLAGS
+
+ export MAKE="make -j$(nproc)"
+
+ # use archlinux's fortran rather then the one that ships with sage to compile sage's fortran
+ export FC=/usr/bin/gfortran
+
+ # disable building with debugging support
+ export SAGE_DEBUG='no'
+
+ # enable fat binaries (disables processor specific optimizations)
+ # comment out if you're only building it for yourself
+ export SAGE_FAT_BINARY='yes'
+
+ # can't write to root in a clean chroot
+ export DOT_SAGE="${srcdir}/build"
+
+ # singular is broken
+ export CPP='/usr/bin/cpp'
+
+ # only build sage, no documents
+ #make build
+ make
+ ./sage --bdist "${pkgver}"
+}
+
+<< COMMENT
+check() {
+ cd "sage-${pkgver}"
+
+ make test
+
+ # uncomment if we want to run all the tests (warning: very long)
+ #make ptestlong
+}
+COMMENT
+
+package() {
+ cd "sage-${pkgver}"
+
+ # cp because make install is experimental and will corrupt the install
+ install -d "${pkgdir}/opt/sage"
+ cp -dpr --no-preserve=ownership dist/sage-"${pkgver}-$CARCH-Linux/"* "${pkgdir}/opt/sage/"
+
+ # move SageTeX files to more appropriate directory
+ install -d "${pkgdir}/usr/share"
+ mv "${pkgdir}/opt/sage/local/share/texmf" "${pkgdir}/usr/share"
+
+ # create link to main binary
+ install -d "${pkgdir}/usr/bin"
+ ln -s "/opt/sage/sage" "${pkgdir}/usr/bin/sage"
+
+ # remove build logs
+ rm -f "${pkgdir}/opt/sage/*.log"
+ rm -rf "${pkgdir}/opt/sage/spkg/logs"
+
+ # remove source packages, since they are rarely needed, they are 300mb in size (compressed)
+ rm -f "${pkgdir}/opt/sage/spkg/base/*spkg"
+ rm -f "${pkgdir}/opt/sage/spkg/standard/*spkg"
+
+ # install a systemd user unit
+ install -Dm644 "${srcdir}/sage.service" "${pkgdir}/usr/lib/systemd/user/sage.service"
+ # install *.desktop and icon files
+ install -Dm644 "${srcdir}/SAGE-notebook.desktop" \
+ "${pkgdir}/usr/share/applications/SAGE-notebook.desktop"
+ install -Dm644 "${pkgdir}/opt/sage/devel/sagenb-main/sagenb/data/sage/images/icon128x128.png" \
+ "${pkgdir}/usr/share/pixmaps/SAGE-notebook.png"
+}
+
+# vim :set ts=2 sw=2 et:
Copied: sage-mathematics/repos/community-staging-x86_64/fix-atlas.patch (from rev 102309, sage-mathematics/trunk/fix-atlas.patch)
===================================================================
--- community-staging-x86_64/fix-atlas.patch (rev 0)
+++ community-staging-x86_64/fix-atlas.patch 2013-12-08 08:41:02 UTC (rev 102310)
@@ -0,0 +1,10 @@
+--- spkg-install 2013-08-30 21:57:13.000000000 +0200
++++ spkg-install.new 2013-10-11 23:40:10.772191176 +0200
+@@ -296,6 +296,7 @@
+ cmd += ' --prefix=' + conf['SAGE_LOCAL']
+ cmd += ' --with-netlib-lapack-tarfile=' + LAPACK_TARFILE
+ cmd += ' --cc="' + CC + '"'
++ cmd += ' -D c -DWALL'
+
+ ## -Si latune 1: enable lapack tuning
+ ## typically adds 3-4 hours of install time
Copied: sage-mathematics/repos/community-staging-x86_64/sage-mathematics.install (from rev 102309, sage-mathematics/trunk/sage-mathematics.install)
===================================================================
--- community-staging-x86_64/sage-mathematics.install (rev 0)
+++ community-staging-x86_64/sage-mathematics.install 2013-12-08 08:41:02 UTC (rev 102310)
@@ -0,0 +1,60 @@
+post_install() {
+ cd /opt/sage
+ update-desktop-database -q
+
+ # set HOME because when sage updates its sage_root (after being moved) it will write files to ~/.sage with root ownership
+ # the files it writes to ~/.sage can be safely ignored
+ HOME=/tmp ./sage -c
+
+ # add sagemath user for the daemon
+ useradd -r -c 'Sage daemon' -d /opt/sage -s /bin/false sagemath
+
+ # Update LaTeX db to point to SageTeX
+ if [ -f /usr/bin/texhash ]; then
+ /usr/bin/texhash /usr/share/texmf
+ else
+ echo 'Warning: could not find /usr/bin/texhash'
+ echo 'SageTeX has been installed but you need to run:'
+ echo '# texhash /usr/share/texmf'
+ echo 'So that LaTeX will be able to find it.'
+ fi
+
+echo '
+ ___
+/ (_) o |
+\__ _ _ __ |
+/ / |/ | | / \_| | |
+\___/ | |_/|/\__/ \_/|/o
+ /| /|
+ \| \|
+ ________________________________
+< sage-mathematics, I mean, MOO! >
+ --------------------------------
+ \ ^__^
+ \ (oo)\_______
+ (__)\ )\/\
+ ||----w |
+ || ||
+'
+
+}
+
+post_upgrade() {
+ post_install $1
+ echo "There is now a user session unit included to run a sage notebook as your user."
+ echo "The wiki includes a guide on starting systemd user sessions"
+}
+
+post_remove() {
+ # Update LaTeX db to remove SageTeX entries
+ update-desktop-database -q
+ if [ -f /usr/bin/texhash ]; then
+ /usr/bin/texhash /usr/share/texmf
+ fi
+
+ # remove the sagemath daemon user
+ userdel sagemath
+
+ # clean up left overs
+ rm -rf /opt/sage
+}
Copied: sage-mathematics/repos/community-staging-x86_64/sage.service (from rev 102309, sage-mathematics/trunk/sage.service)
===================================================================
--- community-staging-x86_64/sage.service (rev 0)
+++ community-staging-x86_64/sage.service 2013-12-08 08:41:02 UTC (rev 102310)
@@ -0,0 +1,8 @@
+[Unit]
+Description=A free open-source mathematics software system
+
+[Service]
+ExecStart=/opt/sage/sage -n
+
+[Install]
+WantedBy=default.target
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