[arch-commits] Commit in python-biopython/repos (6 files)

Evgeniy Alekseev arcanis at archlinux.org
Thu Dec 18 18:50:15 UTC 2014


    Date: Thursday, December 18, 2014 @ 19:50:14
  Author: arcanis
Revision: 124082

archrelease: copy trunk to community-i686, community-x86_64

Added:
  python-biopython/repos/community-i686/ChangeLog
    (from rev 124081, python-biopython/trunk/ChangeLog)
  python-biopython/repos/community-i686/PKGBUILD
    (from rev 124081, python-biopython/trunk/PKGBUILD)
  python-biopython/repos/community-x86_64/ChangeLog
    (from rev 124081, python-biopython/trunk/ChangeLog)
  python-biopython/repos/community-x86_64/PKGBUILD
    (from rev 124081, python-biopython/trunk/PKGBUILD)
Deleted:
  python-biopython/repos/community-i686/PKGBUILD
  python-biopython/repos/community-x86_64/PKGBUILD

----------------------------+
 /PKGBUILD                  |  108 +++++++++++++++++++++++++++++++++++++++++++
 community-i686/ChangeLog   |    2 
 community-i686/PKGBUILD    |   53 ---------------------
 community-x86_64/ChangeLog |    2 
 community-x86_64/PKGBUILD  |   53 ---------------------
 5 files changed, 112 insertions(+), 106 deletions(-)

Copied: python-biopython/repos/community-i686/ChangeLog (from rev 124081, python-biopython/trunk/ChangeLog)
===================================================================
--- community-i686/ChangeLog	                        (rev 0)
+++ community-i686/ChangeLog	2014-12-18 18:50:14 UTC (rev 124082)
@@ -0,0 +1,2 @@
+1.65-1:
+upstream update

Deleted: community-i686/PKGBUILD
===================================================================
--- community-i686/PKGBUILD	2014-12-18 18:49:53 UTC (rev 124081)
+++ community-i686/PKGBUILD	2014-12-18 18:50:14 UTC (rev 124082)
@@ -1,53 +0,0 @@
-# $Id$
-# Maintainer: Evgeniy Alekseev <arcanis.arch at gmail dot com>
-# Contributor: Stunts <f.pinamartins at gmail dot com>
-# Contributor: damir <damir at archlinux dot org>
-
-pkgbase=python-biopython
-pkgname=('python-biopython' 'python2-biopython')
-_pkgname=biopython
-pkgver=1.64
-pkgrel=2
-pkgdesc="Freely available Python tools for computational molecular biology"
-arch=('i686' 'x86_64')
-url="http://www.biopython.org"
-license=('custom')
-depends=('python-numpy' 'python2-numpy')
-source=(http://www.biopython.org/DIST/${_pkgname}-${pkgver}.tar.gz)
-md5sums=('c7636372c4e775d59391e0aa1f0c56c7')
-
-prepare() {
-  cp -r "${_pkgname}-${pkgver}" "${_pkgname}-${pkgver}-py2"
-  # change python to python2
-  find "${_pkgname}-${pkgver}-py2" -name '*.py' -type f -exec \
-      sed -i 's|env python|env python2|' {} \;
-}
-
-build() {
-  cd "${srcdir}/${_pkgname}-${pkgver}"
-  python setup.py build
-
-  cd "${srcdir}/${_pkgname}-${pkgver}-py2"
-  python2 setup.py build
-}
-
-package_python-biopython() {
-  depends=('python-numpy')
-  optdepends=('python-mysql-connector: for BioSQL module')
-
-  cd "${srcdir}/${_pkgname}-${pkgver}"
-  python setup.py install --root="${pkgdir}"
-  install -Dm644 "LICENSE" "${pkgdir}/usr/share/licenses/${pkgname}/LICENSE"
-}
-
-package_python2-biopython() {
-  depends=('python2-numpy')
-  optdepends=('python2-reportlab: for pdf graphics code'
-              'python2-mysql-connector: for BioSQL module'
-              'mysql-python: for BioSQL module')
-
-  cd "${srcdir}/${_pkgname}-${pkgver}-py2"
-  python2 setup.py install --root="${pkgdir}"
-  install -Dm644 "LICENSE" "${pkgdir}/usr/share/licenses/${pkgname}/LICENSE"
-}
-

Copied: python-biopython/repos/community-i686/PKGBUILD (from rev 124081, python-biopython/trunk/PKGBUILD)
===================================================================
--- community-i686/PKGBUILD	                        (rev 0)
+++ community-i686/PKGBUILD	2014-12-18 18:50:14 UTC (rev 124082)
@@ -0,0 +1,54 @@
+# $Id$
+# Maintainer: Evgeniy Alekseev <arcanis.arch at gmail dot com>
+# Contributor: Stunts <f.pinamartins at gmail dot com>
+# Contributor: damir <damir at archlinux dot org>
+
+pkgbase=python-biopython
+pkgname=('python-biopython' 'python2-biopython')
+_pkgname=biopython
+pkgver=1.65
+pkgrel=1
+pkgdesc="Freely available Python tools for computational molecular biology"
+arch=('i686' 'x86_64')
+url="http://www.biopython.org"
+license=('custom')
+depends=('python-numpy' 'python2-numpy')
+source=(http://www.biopython.org/DIST/${_pkgname}-${pkgver}.tar.gz)
+changelog=ChangeLog
+md5sums=('143e7861ade85c0a8b5e2bbdd1da1f67')
+
+prepare() {
+  cp -r "${_pkgname}-${pkgver}" "${_pkgname}-${pkgver}-py2"
+  # change python to python2
+  find "${_pkgname}-${pkgver}-py2" -name '*.py' -type f -exec \
+      sed -i 's|env python|env python2|' {} \;
+}
+
+build() {
+  cd "${srcdir}/${_pkgname}-${pkgver}"
+  python setup.py build
+
+  cd "${srcdir}/${_pkgname}-${pkgver}-py2"
+  python2 setup.py build
+}
+
+package_python-biopython() {
+  depends=('python-numpy')
+  optdepends=('python-mysql-connector: for BioSQL module')
+
+  cd "${srcdir}/${_pkgname}-${pkgver}"
+  python setup.py install --root="${pkgdir}"
+  install -Dm644 "LICENSE" "${pkgdir}/usr/share/licenses/${pkgname}/LICENSE"
+}
+
+package_python2-biopython() {
+  depends=('python2-numpy')
+  optdepends=('python2-reportlab: for pdf graphics code'
+              'python2-mysql-connector: for BioSQL module'
+              'mysql-python: for BioSQL module')
+
+  cd "${srcdir}/${_pkgname}-${pkgver}-py2"
+  python2 setup.py install --root="${pkgdir}"
+  install -Dm644 "LICENSE" "${pkgdir}/usr/share/licenses/${pkgname}/LICENSE"
+}
+

Copied: python-biopython/repos/community-x86_64/ChangeLog (from rev 124081, python-biopython/trunk/ChangeLog)
===================================================================
--- community-x86_64/ChangeLog	                        (rev 0)
+++ community-x86_64/ChangeLog	2014-12-18 18:50:14 UTC (rev 124082)
@@ -0,0 +1,2 @@
+1.65-1:
+upstream update

Deleted: community-x86_64/PKGBUILD
===================================================================
--- community-x86_64/PKGBUILD	2014-12-18 18:49:53 UTC (rev 124081)
+++ community-x86_64/PKGBUILD	2014-12-18 18:50:14 UTC (rev 124082)
@@ -1,53 +0,0 @@
-# $Id$
-# Maintainer: Evgeniy Alekseev <arcanis.arch at gmail dot com>
-# Contributor: Stunts <f.pinamartins at gmail dot com>
-# Contributor: damir <damir at archlinux dot org>
-
-pkgbase=python-biopython
-pkgname=('python-biopython' 'python2-biopython')
-_pkgname=biopython
-pkgver=1.64
-pkgrel=2
-pkgdesc="Freely available Python tools for computational molecular biology"
-arch=('i686' 'x86_64')
-url="http://www.biopython.org"
-license=('custom')
-depends=('python-numpy' 'python2-numpy')
-source=(http://www.biopython.org/DIST/${_pkgname}-${pkgver}.tar.gz)
-md5sums=('c7636372c4e775d59391e0aa1f0c56c7')
-
-prepare() {
-  cp -r "${_pkgname}-${pkgver}" "${_pkgname}-${pkgver}-py2"
-  # change python to python2
-  find "${_pkgname}-${pkgver}-py2" -name '*.py' -type f -exec \
-      sed -i 's|env python|env python2|' {} \;
-}
-
-build() {
-  cd "${srcdir}/${_pkgname}-${pkgver}"
-  python setup.py build
-
-  cd "${srcdir}/${_pkgname}-${pkgver}-py2"
-  python2 setup.py build
-}
-
-package_python-biopython() {
-  depends=('python-numpy')
-  optdepends=('python-mysql-connector: for BioSQL module')
-
-  cd "${srcdir}/${_pkgname}-${pkgver}"
-  python setup.py install --root="${pkgdir}"
-  install -Dm644 "LICENSE" "${pkgdir}/usr/share/licenses/${pkgname}/LICENSE"
-}
-
-package_python2-biopython() {
-  depends=('python2-numpy')
-  optdepends=('python2-reportlab: for pdf graphics code'
-              'python2-mysql-connector: for BioSQL module'
-              'mysql-python: for BioSQL module')
-
-  cd "${srcdir}/${_pkgname}-${pkgver}-py2"
-  python2 setup.py install --root="${pkgdir}"
-  install -Dm644 "LICENSE" "${pkgdir}/usr/share/licenses/${pkgname}/LICENSE"
-}
-

Copied: python-biopython/repos/community-x86_64/PKGBUILD (from rev 124081, python-biopython/trunk/PKGBUILD)
===================================================================
--- community-x86_64/PKGBUILD	                        (rev 0)
+++ community-x86_64/PKGBUILD	2014-12-18 18:50:14 UTC (rev 124082)
@@ -0,0 +1,54 @@
+# $Id$
+# Maintainer: Evgeniy Alekseev <arcanis.arch at gmail dot com>
+# Contributor: Stunts <f.pinamartins at gmail dot com>
+# Contributor: damir <damir at archlinux dot org>
+
+pkgbase=python-biopython
+pkgname=('python-biopython' 'python2-biopython')
+_pkgname=biopython
+pkgver=1.65
+pkgrel=1
+pkgdesc="Freely available Python tools for computational molecular biology"
+arch=('i686' 'x86_64')
+url="http://www.biopython.org"
+license=('custom')
+depends=('python-numpy' 'python2-numpy')
+source=(http://www.biopython.org/DIST/${_pkgname}-${pkgver}.tar.gz)
+changelog=ChangeLog
+md5sums=('143e7861ade85c0a8b5e2bbdd1da1f67')
+
+prepare() {
+  cp -r "${_pkgname}-${pkgver}" "${_pkgname}-${pkgver}-py2"
+  # change python to python2
+  find "${_pkgname}-${pkgver}-py2" -name '*.py' -type f -exec \
+      sed -i 's|env python|env python2|' {} \;
+}
+
+build() {
+  cd "${srcdir}/${_pkgname}-${pkgver}"
+  python setup.py build
+
+  cd "${srcdir}/${_pkgname}-${pkgver}-py2"
+  python2 setup.py build
+}
+
+package_python-biopython() {
+  depends=('python-numpy')
+  optdepends=('python-mysql-connector: for BioSQL module')
+
+  cd "${srcdir}/${_pkgname}-${pkgver}"
+  python setup.py install --root="${pkgdir}"
+  install -Dm644 "LICENSE" "${pkgdir}/usr/share/licenses/${pkgname}/LICENSE"
+}
+
+package_python2-biopython() {
+  depends=('python2-numpy')
+  optdepends=('python2-reportlab: for pdf graphics code'
+              'python2-mysql-connector: for BioSQL module'
+              'mysql-python: for BioSQL module')
+
+  cd "${srcdir}/${_pkgname}-${pkgver}-py2"
+  python2 setup.py install --root="${pkgdir}"
+  install -Dm644 "LICENSE" "${pkgdir}/usr/share/licenses/${pkgname}/LICENSE"
+}
+



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