[arch-commits] Commit in python-biopython/repos (4 files)

[Evgeniy Alekseev]

    Date: Thursday, May 29, 2014 @ 17:05:34
  Author: arcanis
Revision: 112178

archrelease: copy trunk to community-staging-i686, community-staging-x86_64

Added:
  python-biopython/repos/community-staging-i686/
  python-biopython/repos/community-staging-i686/PKGBUILD
    (from rev 112177, python-biopython/trunk/PKGBUILD)
  python-biopython/repos/community-staging-x86_64/
  python-biopython/repos/community-staging-x86_64/PKGBUILD
    (from rev 112177, python-biopython/trunk/PKGBUILD)

-----------------------------------+
 community-staging-i686/PKGBUILD   |   51 ++++++++++++++++++++++++++++++++++++
 community-staging-x86_64/PKGBUILD |   51 ++++++++++++++++++++++++++++++++++++
 2 files changed, 102 insertions(+)

Copied: python-biopython/repos/community-staging-i686/PKGBUILD (from rev 112177, python-biopython/trunk/PKGBUILD)
===================================================================
--- community-staging-i686/PKGBUILD	                        (rev 0)
+++ community-staging-i686/PKGBUILD	2014-05-29 15:05:34 UTC (rev 112178)
@@ -0,0 +1,51 @@
+# $Id$
+# Maintainer: Evgeniy Alekseev <arcanis.arch at gmail dot com>
+# Contributor: Stunts <f.pinamartins at gmail dot com>
+# Contributor: damir <damir at archlinux dot org>
+
+pkgbase=python-biopython
+pkgname=('python-biopython' 'python2-biopython')
+_pkgname=biopython
+pkgver=1.64
+pkgrel=1
+pkgdesc="Freely available Python tools for computational molecular biology"
+arch=('i686' 'x86_64')
+url="http://www.biopython.org"
+license=('custom')
+depends=('python-numpy' 'python2-numpy')
+source=(http://www.biopython.org/DIST/${_pkgname}-${pkgver}.tar.gz)
+md5sums=('c7636372c4e775d59391e0aa1f0c56c7')
+
+prepare() {
+  cp -r "${_pkgname}-${pkgver}" "${_pkgname}-${pkgver}-py2"
+  # change python to python2
+  find "${_pkgname}-${pkgver}-py2" -name '*.py' -type f -exec \
+      sed -i 's|env python|env python2|' {} \;
+}
+
+build() {
+  cd "${srcdir}/${_pkgname}-${pkgver}"
+  python setup.py build
+
+  cd "${srcdir}/${_pkgname}-${pkgver}-py2"
+  python2 setup.py build
+}
+
+package_python-biopython() {
+  depends=('python-numpy')
+
+  cd "${srcdir}/${_pkgname}-${pkgver}"
+  python setup.py install --root="${pkgdir}"
+  install -Dm644 "LICENSE" "${pkgdir}/usr/share/licenses/${pkgname}/LICENSE"
+}
+
+package_python2-biopython() {
+  depends=('python2-numpy')
+  optdepends=('python2-reportlab: for pdf graphics code'
+              'mysql-python: for BioSQL module')
+
+  cd "${srcdir}/${_pkgname}-${pkgver}-py2"
+  python2 setup.py install --root="${pkgdir}"
+  install -Dm644 "LICENSE" "${pkgdir}/usr/share/licenses/${pkgname}/LICENSE"
+}
+

Copied: python-biopython/repos/community-staging-x86_64/PKGBUILD (from rev 112177, python-biopython/trunk/PKGBUILD)
===================================================================
--- community-staging-x86_64/PKGBUILD	                        (rev 0)
+++ community-staging-x86_64/PKGBUILD	2014-05-29 15:05:34 UTC (rev 112178)
@@ -0,0 +1,51 @@
+# $Id$
+# Maintainer: Evgeniy Alekseev <arcanis.arch at gmail dot com>
+# Contributor: Stunts <f.pinamartins at gmail dot com>
+# Contributor: damir <damir at archlinux dot org>
+
+pkgbase=python-biopython
+pkgname=('python-biopython' 'python2-biopython')
+_pkgname=biopython
+pkgver=1.64
+pkgrel=1
+pkgdesc="Freely available Python tools for computational molecular biology"
+arch=('i686' 'x86_64')
+url="http://www.biopython.org"
+license=('custom')
+depends=('python-numpy' 'python2-numpy')
+source=(http://www.biopython.org/DIST/${_pkgname}-${pkgver}.tar.gz)
+md5sums=('c7636372c4e775d59391e0aa1f0c56c7')
+
+prepare() {
+  cp -r "${_pkgname}-${pkgver}" "${_pkgname}-${pkgver}-py2"
+  # change python to python2
+  find "${_pkgname}-${pkgver}-py2" -name '*.py' -type f -exec \
+      sed -i 's|env python|env python2|' {} \;
+}
+
+build() {
+  cd "${srcdir}/${_pkgname}-${pkgver}"
+  python setup.py build
+
+  cd "${srcdir}/${_pkgname}-${pkgver}-py2"
+  python2 setup.py build
+}
+
+package_python-biopython() {
+  depends=('python-numpy')
+
+  cd "${srcdir}/${_pkgname}-${pkgver}"
+  python setup.py install --root="${pkgdir}"
+  install -Dm644 "LICENSE" "${pkgdir}/usr/share/licenses/${pkgname}/LICENSE"
+}
+
+package_python2-biopython() {
+  depends=('python2-numpy')
+  optdepends=('python2-reportlab: for pdf graphics code'
+              'mysql-python: for BioSQL module')
+
+  cd "${srcdir}/${_pkgname}-${pkgver}-py2"
+  python2 setup.py install --root="${pkgdir}"
+  install -Dm644 "LICENSE" "${pkgdir}/usr/share/licenses/${pkgname}/LICENSE"
+}
+