[arch-commits] Commit in python-biopython/repos (6 files)
Evgeniy Alekseev
arcanis at archlinux.org
Thu Jun 9 23:18:58 UTC 2016
Date: Friday, June 10, 2016 @ 01:18:58
Author: arcanis
Revision: 178906
archrelease: copy trunk to community-testing-i686, community-testing-x86_64
Added:
python-biopython/repos/community-testing-i686/
python-biopython/repos/community-testing-i686/ChangeLog
(from rev 178905, python-biopython/trunk/ChangeLog)
python-biopython/repos/community-testing-i686/PKGBUILD
(from rev 178905, python-biopython/trunk/PKGBUILD)
python-biopython/repos/community-testing-x86_64/
python-biopython/repos/community-testing-x86_64/ChangeLog
(from rev 178905, python-biopython/trunk/ChangeLog)
python-biopython/repos/community-testing-x86_64/PKGBUILD
(from rev 178905, python-biopython/trunk/PKGBUILD)
------------------------------------+
community-testing-i686/ChangeLog | 11 +++++++
community-testing-i686/PKGBUILD | 54 +++++++++++++++++++++++++++++++++++
community-testing-x86_64/ChangeLog | 11 +++++++
community-testing-x86_64/PKGBUILD | 54 +++++++++++++++++++++++++++++++++++
4 files changed, 130 insertions(+)
Copied: python-biopython/repos/community-testing-i686/ChangeLog (from rev 178905, python-biopython/trunk/ChangeLog)
===================================================================
--- community-testing-i686/ChangeLog (rev 0)
+++ community-testing-i686/ChangeLog 2016-06-09 23:18:58 UTC (rev 178906)
@@ -0,0 +1,11 @@
+1.67-1:
+upstream update
+
+1.66-1:
+upstream update
+
+1.65-3:
+python3.5 rebuild
+
+1.65-1:
+upstream update
Copied: python-biopython/repos/community-testing-i686/PKGBUILD (from rev 178905, python-biopython/trunk/PKGBUILD)
===================================================================
--- community-testing-i686/PKGBUILD (rev 0)
+++ community-testing-i686/PKGBUILD 2016-06-09 23:18:58 UTC (rev 178906)
@@ -0,0 +1,54 @@
+# $Id$
+# Maintainer: Evgeniy Alekseev <arcanis.arch at gmail dot com>
+# Contributor: Stunts <f.pinamartins at gmail dot com>
+# Contributor: damir <damir at archlinux dot org>
+
+pkgbase=python-biopython
+pkgname=('python-biopython' 'python2-biopython')
+_pkgname=biopython
+pkgver=1.67
+pkgrel=1
+pkgdesc="Freely available Python tools for computational molecular biology"
+arch=('i686' 'x86_64')
+url="http://www.biopython.org"
+license=('custom')
+depends=('python-numpy' 'python2-numpy')
+source=(http://www.biopython.org/DIST/${_pkgname}-${pkgver}.tar.gz)
+changelog=ChangeLog
+md5sums=('542699cc310588c1997806681ee1f65e')
+
+prepare() {
+ cp -r "${_pkgname}-${pkgver}" "${_pkgname}-${pkgver}-py2"
+ # change python to python2
+ find "${_pkgname}-${pkgver}-py2" -name '*.py' -type f -exec \
+ sed -i 's|env python|env python2|' {} \;
+}
+
+build() {
+ cd "${srcdir}/${_pkgname}-${pkgver}"
+ python setup.py build
+
+ cd "${srcdir}/${_pkgname}-${pkgver}-py2"
+ python2 setup.py build
+}
+
+package_python-biopython() {
+ depends=('python-numpy')
+ optdepends=('python-mysql-connector: for BioSQL module')
+
+ cd "${srcdir}/${_pkgname}-${pkgver}"
+ python setup.py install --root="${pkgdir}"
+ install -Dm644 "LICENSE" "${pkgdir}/usr/share/licenses/${pkgname}/LICENSE"
+}
+
+package_python2-biopython() {
+ depends=('python2-numpy')
+ optdepends=('python2-reportlab: for pdf graphics code'
+ 'python2-mysql-connector: for BioSQL module'
+ 'mysql-python: for BioSQL module')
+
+ cd "${srcdir}/${_pkgname}-${pkgver}-py2"
+ python2 setup.py install --root="${pkgdir}"
+ install -Dm644 "LICENSE" "${pkgdir}/usr/share/licenses/${pkgname}/LICENSE"
+}
+
Copied: python-biopython/repos/community-testing-x86_64/ChangeLog (from rev 178905, python-biopython/trunk/ChangeLog)
===================================================================
--- community-testing-x86_64/ChangeLog (rev 0)
+++ community-testing-x86_64/ChangeLog 2016-06-09 23:18:58 UTC (rev 178906)
@@ -0,0 +1,11 @@
+1.67-1:
+upstream update
+
+1.66-1:
+upstream update
+
+1.65-3:
+python3.5 rebuild
+
+1.65-1:
+upstream update
Copied: python-biopython/repos/community-testing-x86_64/PKGBUILD (from rev 178905, python-biopython/trunk/PKGBUILD)
===================================================================
--- community-testing-x86_64/PKGBUILD (rev 0)
+++ community-testing-x86_64/PKGBUILD 2016-06-09 23:18:58 UTC (rev 178906)
@@ -0,0 +1,54 @@
+# $Id$
+# Maintainer: Evgeniy Alekseev <arcanis.arch at gmail dot com>
+# Contributor: Stunts <f.pinamartins at gmail dot com>
+# Contributor: damir <damir at archlinux dot org>
+
+pkgbase=python-biopython
+pkgname=('python-biopython' 'python2-biopython')
+_pkgname=biopython
+pkgver=1.67
+pkgrel=1
+pkgdesc="Freely available Python tools for computational molecular biology"
+arch=('i686' 'x86_64')
+url="http://www.biopython.org"
+license=('custom')
+depends=('python-numpy' 'python2-numpy')
+source=(http://www.biopython.org/DIST/${_pkgname}-${pkgver}.tar.gz)
+changelog=ChangeLog
+md5sums=('542699cc310588c1997806681ee1f65e')
+
+prepare() {
+ cp -r "${_pkgname}-${pkgver}" "${_pkgname}-${pkgver}-py2"
+ # change python to python2
+ find "${_pkgname}-${pkgver}-py2" -name '*.py' -type f -exec \
+ sed -i 's|env python|env python2|' {} \;
+}
+
+build() {
+ cd "${srcdir}/${_pkgname}-${pkgver}"
+ python setup.py build
+
+ cd "${srcdir}/${_pkgname}-${pkgver}-py2"
+ python2 setup.py build
+}
+
+package_python-biopython() {
+ depends=('python-numpy')
+ optdepends=('python-mysql-connector: for BioSQL module')
+
+ cd "${srcdir}/${_pkgname}-${pkgver}"
+ python setup.py install --root="${pkgdir}"
+ install -Dm644 "LICENSE" "${pkgdir}/usr/share/licenses/${pkgname}/LICENSE"
+}
+
+package_python2-biopython() {
+ depends=('python2-numpy')
+ optdepends=('python2-reportlab: for pdf graphics code'
+ 'python2-mysql-connector: for BioSQL module'
+ 'mysql-python: for BioSQL module')
+
+ cd "${srcdir}/${_pkgname}-${pkgver}-py2"
+ python2 setup.py install --root="${pkgdir}"
+ install -Dm644 "LICENSE" "${pkgdir}/usr/share/licenses/${pkgname}/LICENSE"
+}
+
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