[arch-commits] Commit in sagemath-doc/repos (12 files)
Antonio Rojas
arojas at archlinux.org
Sat Mar 25 17:49:36 UTC 2017
Date: Saturday, March 25, 2017 @ 17:49:35
Author: arojas
Revision: 218969
archrelease: copy trunk to community-testing-any
Added:
sagemath-doc/repos/community-testing-any/
sagemath-doc/repos/community-testing-any/PKGBUILD
(from rev 218968, sagemath-doc/trunk/PKGBUILD)
sagemath-doc/repos/community-testing-any/disable-fes.patch
(from rev 218968, sagemath-doc/trunk/disable-fes.patch)
sagemath-doc/repos/community-testing-any/docbuild_main.patch
(from rev 218968, sagemath-doc/trunk/docbuild_main.patch)
sagemath-doc/repos/community-testing-any/ecm-7.patch
(from rev 218968, sagemath-doc/trunk/ecm-7.patch)
sagemath-doc/repos/community-testing-any/increase-rtol.patch
(from rev 218968, sagemath-doc/trunk/increase-rtol.patch)
sagemath-doc/repos/community-testing-any/is-package-installed.patch
(from rev 218968, sagemath-doc/trunk/is-package-installed.patch)
sagemath-doc/repos/community-testing-any/package.patch
(from rev 218968, sagemath-doc/trunk/package.patch)
sagemath-doc/repos/community-testing-any/r-no-readline.patch
(from rev 218968, sagemath-doc/trunk/r-no-readline.patch)
sagemath-doc/repos/community-testing-any/sagemath-planarity3.patch
(from rev 218968, sagemath-doc/trunk/sagemath-planarity3.patch)
sagemath-doc/repos/community-testing-any/sagemath-singular-4.1.0.p2.patch
(from rev 218968, sagemath-doc/trunk/sagemath-singular-4.1.0.p2.patch)
sagemath-doc/repos/community-testing-any/sagemath-sphinx-1.5.patch
(from rev 218968, sagemath-doc/trunk/sagemath-sphinx-1.5.patch)
----------------------------------+
PKGBUILD | 107 ++++++++++++
disable-fes.patch | 19 ++
docbuild_main.patch | 8
ecm-7.patch | 79 ++++++++
increase-rtol.patch | 37 ++++
is-package-installed.patch | 328 +++++++++++++++++++++++++++++++++++++
package.patch | 38 ++++
r-no-readline.patch | 11 +
sagemath-planarity3.patch | 113 ++++++++++++
sagemath-singular-4.1.0.p2.patch | 33 +++
sagemath-sphinx-1.5.patch | 149 ++++++++++++++++
11 files changed, 922 insertions(+)
Copied: sagemath-doc/repos/community-testing-any/PKGBUILD (from rev 218968, sagemath-doc/trunk/PKGBUILD)
===================================================================
--- community-testing-any/PKGBUILD (rev 0)
+++ community-testing-any/PKGBUILD 2017-03-25 17:49:35 UTC (rev 218969)
@@ -0,0 +1,107 @@
+# $Id$
+# Maintainer: Antonio Rojas <arojas at archlinux.org>
+
+pkgbase=sagemath-doc
+pkgname=(sagemath-doc sagemath-src)
+pkgver=7.6
+pkgrel=1
+arch=(any)
+url="http://www.sagemath.org"
+license=(GPL)
+makedepends=(sagemath sage-notebook python2-pyzmq python2-pillow python2-docutils tachyon
+ python2-jupyter_client python2-pkgconfig cython2 thebe python2-sphinx python2-ipywidgets)
+source=("$pkgbase-$pkgver.tar.gz::https://github.com/sagemath/sage/archive/$pkgver.tar.gz"
+ package.patch disable-fes.patch docbuild_main.patch is-package-installed.patch ecm-7.patch increase-rtol.patch
+ r-no-readline.patch sagemath-planarity3.patch sagemath-singular-4.1.0.p2.patch sagemath-sphinx-1.5.patch)
+sha256sums=('e6e0729ab25446e7c922058db0eee4b0b294b32c196e34842e843ea9fae41423'
+ '4a2297e4d9d28f0b3a1f58e1b463e332affcb109eafde44837b1657e309c8212'
+ '7ab53d30b877dabb6835fbe67a208bef65fa0aaf40221b4d0b58e4b7086bc47a'
+ '187b75d3ce202126012ff20b6316277b0a003ffdd7f15b820d3b88459d2753c8'
+ 'd60fb0fbd27991ce9496ca035a54b03334b5b53f244227a8d6e13f3327ce75d2'
+ '65ad84c83d5f956fde8eab961f2caad56d64044324c4abc0e56bcd9f44061cb6'
+ 'be925eefeac3f28e639794ddc20d64e6faafd7181804e29417a510224d19ccc7'
+ 'ef9f401fa84fe1772af9efee6816643534f2896da4c23b809937b19771bdfbbf'
+ 'a1c562ebe4538d672404ca3ac2e954a3c955afeb7463f7b4fe6eaa6fa74fe5c7'
+ 'e1912afec58b834fac3b9161c2d5a1794bb618126c6bd7a4be85c834231360e7'
+ '0ffbccdd65ba8dfe84222e62d9e43663735d4f33276f7ec7b2e44ed53d1f24d0')
+
+prepare() {
+ cd sage-$pkgver
+
+# Arch-specific patches
+# assume all optional packages are installed
+ patch -p0 -i ../package.patch
+# fix regressions with ECM 7
+ patch -p1 -i ../ecm-7.patch
+# increase numerical tolerance, needed by scipy 0.18
+ patch -p1 -i ../increase-rtol.patch
+# fix freezes in R interface with readline 7 (Debian)
+ patch -p1 -i ../r-no-readline.patch
+# fix build with planarity 3 (Debian)
+ patch -p2 -i ../sagemath-planarity3.patch
+# fix build with Singular 4.1.0-p2
+ patch -p0 -i ../sagemath-singular-4.1.0.p2.patch
+
+# Upstream patches
+# fix build against libfes 0.2 http://trac.sagemath.org/ticket/15209
+# patch -p0 -i ../fes02.patch
+# disable fes module, fails to build
+ patch -p0 -i ../disable-fes.patch
+# replace is_package_installed usage http://trac.sagemath.org/ticket/20377
+ patch -p1 -i ../is-package-installed.patch
+# fix doc build with sphinx 1.5 https://trac.sagemath.org/ticket/22252
+ patch -p1 -i ../sagemath-sphinx-1.5.patch
+
+# fix relative imports
+ patch -p0 -i ../docbuild_main.patch
+
+# use python2
+ sed -e 's|cython %s %s|cython2 %s %s|' -e 's|python setup.py|python2 setup.py|' -i src/sage/misc/cython.py
+
+ mkdir -p local-python
+ ln -sr src/sage_setup local-python
+}
+
+build() {
+ cd sage-$pkgver/src
+
+ export SAGE_LOCAL="/usr"
+ export SAGE_SRC="$PWD"
+ export SAGE_DOC_SRC="$SAGE_SRC"/doc
+ export SAGE_DOC="$SAGE_SRC"/doc
+ export SAGE_DOC_MATHJAX=yes
+ export PYTHONPATH="/usr/lib/sage/site-packages:$srcdir/sage-$pkgver/local-python"
+ python2 sage_setup/docbuild --no-pdf-links -k all html
+}
+
+package_sagemath-doc() {
+ pkgdesc="HTML documentation and inline help for SageMath"
+ depends=(sage-notebook python2-sphinx gap-doc thebe)
+ conflicts=(sage-mathematics-doc)
+ replaces=(sage-mathematics-doc)
+
+ cd sage-$pkgver/src/doc
+
+ mkdir -p "$pkgdir"/usr/share/doc/sage/en
+ cp -r en/introspect "$pkgdir"/usr/share/doc/sage/en
+ cp -r common "$pkgdir"/usr/share/doc/sage
+ cp -r html "$pkgdir"/usr/share/doc/sage
+
+# Replace duplicated files by symlinks (Gentoo)
+ cd "$pkgdir"/usr/share/doc/sage
+ mv html/en/_static{,.tmp}
+ for _dir in `find -name _static` ; do
+ rm -r $_dir
+ ln -s /usr/share/doc/sage/html/en/_static $_dir
+ done
+ mv html/en/_static{.tmp,}
+}
+
+package_sagemath-src() {
+ pkgdesc="Source files for SageMath"
+ conflicts=(sage-mathematics-src)
+ replaces=(sage-mathematics-src)
+
+ mkdir -p "$pkgdir"/usr/share/sage/source
+ cp -r sage-$pkgver/src/{sage,sage_setup} "$pkgdir"/usr/share/sage/source
+}
Copied: sagemath-doc/repos/community-testing-any/disable-fes.patch (from rev 218968, sagemath-doc/trunk/disable-fes.patch)
===================================================================
--- community-testing-any/disable-fes.patch (rev 0)
+++ community-testing-any/disable-fes.patch 2017-03-25 17:49:35 UTC (rev 218969)
@@ -0,0 +1,19 @@
+--- src/module_list.py.orig 2015-06-07 11:29:30.710612146 +0200
++++ src/module_list.py 2015-06-07 11:30:21.877506106 +0200
+@@ -564,11 +564,11 @@
+ sources = ["sage/libs/ecl.pyx"],
+ libraries = ["ecl"]),
+
+- OptionalExtension("sage.libs.fes",
+- ["sage/libs/fes.pyx"],
+- language = "c",
+- libraries = ['fes'],
+- package = 'fes'),
++# OptionalExtension("sage.libs.fes",
++# ["sage/libs/fes.pyx"],
++# language = "c",
++# libraries = ['fes'],
++# package = 'fes'),
+
+ Extension('sage.libs.flint.flint',
+ sources = ["sage/libs/flint/flint.pyx"],
Copied: sagemath-doc/repos/community-testing-any/docbuild_main.patch (from rev 218968, sagemath-doc/trunk/docbuild_main.patch)
===================================================================
--- community-testing-any/docbuild_main.patch (rev 0)
+++ community-testing-any/docbuild_main.patch 2017-03-25 17:49:35 UTC (rev 218969)
@@ -0,0 +1,8 @@
+--- src/sage_setup/docbuild/__main__.py.orig
++++ src/sage_setup/docbuild/__main__.py
+@@ -1,3 +1,3 @@
+-from . import main
++from sage_setup.docbuild import main
+ main()
+
+ # Remove old documentation
Copied: sagemath-doc/repos/community-testing-any/ecm-7.patch (from rev 218968, sagemath-doc/trunk/ecm-7.patch)
===================================================================
--- community-testing-any/ecm-7.patch (rev 0)
+++ community-testing-any/ecm-7.patch 2017-03-25 17:49:35 UTC (rev 218969)
@@ -0,0 +1,79 @@
+--- a/src/sage/interfaces/ecm.py.orig 2016-05-16 22:18:03.894827738 +0200
++++ b/src/sage/interfaces/ecm.py 2016-05-16 22:19:14.674904932 +0200
+@@ -140,9 +140,6 @@
+ - ``ve`` -- integer `n`. Verbosely show short (`< n`
+ character) expressions on each loop
+
+- - ``cofdec`` -- boolean. Force cofactor output in decimal
+- (even if expressions are used )
+-
+ - ``B2scale`` -- integer. Multiplies the default B2 value
+
+ - ``go`` -- integer. Preload with group order val, which can
+@@ -395,15 +392,15 @@
+ if m is not None:
+ factor = m.group('factor')
+ primality = m.group('primality')
+- assert primality in ['probable prime', 'composite']
+- result += [(ZZ(factor), primality == 'probable prime')]
++ assert primality in ['prime', 'composite']
++ result += [(ZZ(factor), primality == 'prime')]
+ continue # cofactor on the next line
+ m = self._found_cofactor_re.match(line)
+ if m is not None:
+ cofactor = m.group('cofactor')
+ primality = m.group('primality')
+- assert primality in ['Probable prime', 'Composite']
+- result += [(ZZ(cofactor), primality == 'Probable prime')]
++ assert primality in ['Prime', 'Composite']
++ result += [(ZZ(cofactor), primality == 'Prime')]
+ # assert len(result) == 2
+ return result
+ raise ValueError('failed to parse ECM output')
+@@ -501,7 +498,6 @@
+ if factor_digits is not None:
+ B1 = self.recommended_B1(factor_digits)
+ kwds['one'] = True
+- kwds['cofdec'] = True
+ cmd = self._make_cmd(B1, None, kwds)
+ out = self._run_ecm(cmd, n)
+ return self._parse_output(n, out)
+@@ -828,8 +828,8 @@
+ Step 1 took 12ms
+ Step 2 took 17ms
+ ********** Factor found in step 2: 79792266297612017
+-Found probable prime factor of 17 digits: 79792266297612017
+-Probable prime cofactor 6366805760909027985741435139224233 has 34 digits
++Found prime factor of 17 digits: 79792266297612017
++Prime cofactor 6366805760909027985741435139224233 has 34 digits
+ """
+
+ TEST_ECM_OUTPUT_2 = """
+@@ -839,8 +839,8 @@
+ Step 1 took 2ms
+ Step 2 took 3ms
+ ********** Factor found in step 2: 179424673
+-Found probable prime factor of 9 digits: 179424673
+-Probable prime cofactor 179424673 has 9 digits
++Found prime factor of 9 digits: 179424673
++Prime cofactor 179424673 has 9 digits
+ """
+
+ TEST_ECM_OUTPUT_3 = """
+@@ -858,7 +858,7 @@
+ Step 1 took 5ms
+ Step 2 took 4ms
+ ********** Factor found in step 2: 197002597249
+-Found probable prime factor of 12 digits: 197002597249
++Found prime factor of 12 digits: 197002597249
+ Composite cofactor 339872432034468861533158743041639097889948066859 has 48 digits
+ """
+
+@@ -870,5 +870,5 @@
+ Step 2 took 2ms
+ ********** Factor found in step 2: 265748496095531068869578877937
+ Found composite factor of 30 digits: 265748496095531068869578877937
+-Probable prime cofactor 251951573867253012259144010843 has 30 digits
++Prime cofactor 251951573867253012259144010843 has 30 digits
+ """
+
Copied: sagemath-doc/repos/community-testing-any/increase-rtol.patch (from rev 218968, sagemath-doc/trunk/increase-rtol.patch)
===================================================================
--- community-testing-any/increase-rtol.patch (rev 0)
+++ community-testing-any/increase-rtol.patch 2017-03-25 17:49:35 UTC (rev 218969)
@@ -0,0 +1,37 @@
+diff -ru sage-7.3.orig/src/sage/coding/code_bounds.py sage-7.3/src/sage/coding/code_bounds.py
+--- sage-7.3.orig/src/sage/coding/code_bounds.py 2016-08-05 20:26:10.033204091 +0200
++++ sage-7.3/src/sage/coding/code_bounds.py 2016-08-05 20:32:27.276579565 +0200
+@@ -554,7 +554,7 @@
+ if q < 2: # Here we check that q is actually at least 2
+ raise ValueError("The value q must be an integer greater than 1")
+
+- eps = 4.5e-16 # find_root has about this as the default xtol
++ eps = 4.5e-15 # find_root has about this as the default xtol
+ ymax = 1 - 1/q
+ if x <= eps:
+ return 0
+diff -ru sage-7.3.orig/src/sage/numerical/optimize.py sage-7.3/src/sage/numerical/optimize.py
+--- sage-7.3.orig/src/sage/numerical/optimize.py 2016-08-05 20:26:10.816536625 +0200
++++ sage-7.3/src/sage/numerical/optimize.py 2016-08-05 20:32:21.449907130 +0200
+@@ -15,7 +15,7 @@
+ from sage.rings.real_double import RDF
+
+
+-def find_root(f, a, b, xtol=10e-13, rtol=4.5e-16, maxiter=100, full_output=False):
++def find_root(f, a, b, xtol=10e-13, rtol=4.5e-15, maxiter=100, full_output=False):
+ """
+ Numerically find a root of ``f`` on the closed interval `[a,b]`
+ (or `[b,a]`) if possible, where ``f`` is a function in the one variable.
+diff -ru sage-7.3.orig/src/sage/symbolic/expression.pyx sage-7.3/src/sage/symbolic/expression.pyx
+--- sage-7.3.orig/src/sage/symbolic/expression.pyx 2016-08-05 20:26:11.333202767 +0200
++++ sage-7.3/src/sage/symbolic/expression.pyx 2016-08-05 20:32:14.236566826 +0200
+@@ -10884,7 +10884,7 @@
+ ret = ret[0]
+ return ret
+
+- def find_root(self, a, b, var=None, xtol=10e-13, rtol=4.5e-16, maxiter=100, full_output=False):
++ def find_root(self, a, b, var=None, xtol=10e-13, rtol=4.5e-15, maxiter=100, full_output=False):
+ """
+ Numerically find a root of self on the closed interval [a,b] (or
+ [b,a]) if possible, where self is a function in the one variable.
+
Copied: sagemath-doc/repos/community-testing-any/is-package-installed.patch (from rev 218968, sagemath-doc/trunk/is-package-installed.patch)
===================================================================
--- community-testing-any/is-package-installed.patch (rev 0)
+++ community-testing-any/is-package-installed.patch 2017-03-25 17:49:35 UTC (rev 218969)
@@ -0,0 +1,328 @@
+diff --git a/src/sage/databases/cremona.py b/src/sage/databases/cremona.py
+index 0a5f794..2969d92 100644
+--- a/src/sage/databases/cremona.py
++++ b/src/sage/databases/cremona.py
+@@ -53,7 +53,6 @@ from sage.misc.prandom import randint
+
+ import sage.schemes.elliptic_curves.constructor as elliptic
+ from .sql_db import SQLDatabase, verify_column
+-from sage.misc.package import is_package_installed
+ from sage.env import SAGE_SHARE
+ from sage.misc.all import walltime
+
+@@ -824,7 +823,7 @@ class MiniCremonaDatabase(SQLDatabase):
+ if N < self.largest_conductor():
+ message = "There is no elliptic curve with label " + label \
+ + " in the database"
+- elif is_package_installed('database_cremona_ellcurve'):
++ elif os.path.isfile(os.path.join(SAGE_SHARE, "cremona", "cremona.db")):
+ message = "There is no elliptic curve with label " + label \
+ + " in the currently available databases"
+ else:
+@@ -1673,7 +1672,7 @@ def CremonaDatabase(name=None,mini=None,set_global=None):
+ if name is None and not set_global:
+ return _db
+ if set_global and name is None:
+- if is_package_installed('database_cremona_ellcurve'):
++ if os.path.isfile(os.path.join(SAGE_SHARE, "cremona", "cremona.db")):
+ name = 'cremona'
+ else:
+ name = 'cremona mini'
+diff --git a/src/sage/game_theory/normal_form_game.py b/src/sage/game_theory/normal_form_game.py
+index b917d2a..80fb20c 100644
+--- a/src/sage/game_theory/normal_form_game.py
++++ b/src/sage/game_theory/normal_form_game.py
+@@ -614,8 +614,9 @@ from sage.rings.all import QQ
+ from sage.structure.sage_object import SageObject
+ from sage.matrix.constructor import matrix
+ from sage.matrix.constructor import vector
+-from sage.misc.package import is_package_installed
+ from sage.misc.temporary_file import tmp_filename
++import os
++from sage.env import SAGE_LOCAL
+
+ try:
+ from gambit import Game
+@@ -1317,13 +1318,13 @@ class NormalFormGame(SageObject, MutableMapping):
+ raise ValueError("utilities have not been populated")
+
+ if not algorithm:
+- if is_package_installed('lrslib'):
++ if os.path.isfile(os.path.join(SAGE_LOCAL, 'bin', 'lrs')):
+ algorithm = "lrs"
+ else:
+ algorithm = "enumeration"
+
+ if algorithm == "lrs":
+- if not is_package_installed('lrslib'):
++ if not os.path.isfile(os.path.join(SAGE_LOCAL, 'bin', 'lrs')):
+ raise NotImplementedError("lrslib is not installed")
+
+ return self._solve_lrs(maximization)
+diff --git a/src/sage/geometry/polyhedron/base.py b/src/sage/geometry/polyhedron/base.py
+index 2f58d8b..eb519a2 100644
+--- a/src/sage/geometry/polyhedron/base.py
++++ b/src/sage/geometry/polyhedron/base.py
+@@ -21,7 +21,6 @@ import six
+ from sage.structure.element import Element, coerce_binop, is_Vector
+
+ from sage.misc.all import cached_method, prod
+-from sage.misc.package import is_package_installed
+
+ from sage.rings.all import QQ, ZZ
+ from sage.rings.real_double import RDF
+@@ -3691,7 +3690,9 @@ class Polyhedron_base(Element):
+
+ David Avis's lrs program.
+ """
+- if not is_package_installed('lrslib'):
++ import os
++ from sage.env import SAGE_LOCAL
++ if os.path.isfile(os.path.join(SAGE_LOCAL, 'bin', 'lrs')) != True:
+ raise NotImplementedError('You must install the optional lrslib package '
+ 'for this function to work')
+
+diff --git a/src/sage/graphs/generators/classical_geometries.py b/src/sage/graphs/generators/classical_geometries.py
+index e80f2a5..04cd9ce 100644
+--- a/src/sage/graphs/generators/classical_geometries.py
++++ b/src/sage/graphs/generators/classical_geometries.py
+@@ -1287,10 +1287,9 @@ def CossidentePenttilaGraph(q):
+ raise ValueError('q(={}) must be an odd prime power'.format(q))
+
+ from sage.libs.gap.libgap import libgap
+- from sage.misc.package import is_package_installed, PackageNotFoundError
++ from sage.interfaces.gap import gap
+
+- if not is_package_installed('gap_packages'):
+- raise PackageNotFoundError('gap_packages')
++ gap.load_package("grape")
+
+ adj_list=libgap.function_factory("""function(q)
+ local z, e, so, G, nu, G1, G0, B, T, s, O1, O2, x;
+diff --git a/src/sage/graphs/generic_graph.py b/src/sage/graphs/generic_graph.py
+index 252984f..ce19682 100644
+--- a/src/sage/graphs/generic_graph.py
++++ b/src/sage/graphs/generic_graph.py
+@@ -7858,7 +7858,6 @@ class GenericGraph(GenericGraph_pyx):
+ sage: abs(flow_ff-flow_igraph) < 0.00001 # optional python_igraph
+ True
+ """
+- from sage.misc.package import is_package_installed
+ self._scream_if_not_simple(allow_loops=True)
+ if vertex_bound and algorithm in ["FF", "igraph"]:
+ raise ValueError("This method does not support both " +
+@@ -7876,10 +7875,12 @@ class GenericGraph(GenericGraph_pyx):
+ if algorithm is None:
+ if vertex_bound:
+ algorithm = "LP"
+- elif is_package_installed("python_igraph"):
+- algorithm = "igraph"
+ else:
+- algorithm = "FF"
++ algorithm = "igraph"
++ try:
++ import igraph
++ except ImportError:
++ algorithm = "FF"
+
+ if (algorithm == "FF"):
+ return self._ford_fulkerson(x,y, value_only=value_only, integer=integer, use_edge_labels=use_edge_labels)
+diff --git a/src/sage/graphs/graph_generators.py b/src/sage/graphs/graph_generators.py
+index 5919ab3..1766796 100644
+--- a/src/sage/graphs/graph_generators.py
++++ b/src/sage/graphs/graph_generators.py
+@@ -1195,8 +1195,9 @@ class GraphGenerators():
+ .. [buckygen] \G. Brinkmann, J. Goedgebeur and B.D. McKay, Generation of Fullerenes,
+ Journal of Chemical Information and Modeling, 52(11):2910-2918, 2012.
+ """
+- from sage.misc.package import is_package_installed
+- if not is_package_installed("buckygen"):
++ import os
++ from sage.env import SAGE_LOCAL
++ if not os.path.isfile(os.path.join(SAGE_LOCAL, 'bin', 'buckygen')):
+ raise TypeError("the optional buckygen package is not installed")
+
+ # number of vertices should be positive
+@@ -1280,8 +1281,9 @@ class GraphGenerators():
+ .. [benzene] \G. Brinkmann, G. Caporossi and P. Hansen, A Constructive Enumeration of Fusenes and Benzenoids,
+ Journal of Algorithms, 45:155-166, 2002.
+ """
+- from sage.misc.package import is_package_installed
+- if not is_package_installed("benzene"):
++ import os
++ from sage.env import SAGE_LOCAL
++ if not os.path.isfile(os.path.join(SAGE_LOCAL, 'bin', 'benzene')):
+ raise TypeError("the optional benzene package is not installed")
+
+ # number of hexagons should be positive
+@@ -1433,8 +1435,9 @@ class GraphGenerators():
+ .. [plantri] \G. Brinkmann and B.D. McKay, Fast generation of planar graphs,
+ MATCH-Communications in Mathematical and in Computer Chemistry, 58(2):323-357, 2007.
+ """
+- from sage.misc.package import is_package_installed
+- if not is_package_installed("plantri"):
++ import os
++ from sage.env import SAGE_LOCAL
++ if not os.path.isfile(os.path.join(SAGE_LOCAL, 'bin', 'plantri')):
+ raise TypeError("the optional plantri package is not installed")
+
+ # number of vertices should be positive
+@@ -1632,8 +1635,9 @@ class GraphGenerators():
+ sage: [g.size() for g in graphs.triangulations(6, minimum_connectivity=3)] # optional plantri
+ [12, 12]
+ """
+- from sage.misc.package import is_package_installed
+- if not is_package_installed("plantri"):
++ import os
++ from sage.env import SAGE_LOCAL
++ if not os.path.isfile(os.path.join(SAGE_LOCAL, 'bin', 'plantri')):
+ raise TypeError("the optional plantri package is not installed")
+
+ # number of vertices should be positive
+@@ -1786,8 +1790,9 @@ class GraphGenerators():
+ sage: [len(g) for g in graphs.quadrangulations(12, no_nonfacial_quadrangles=True, dual=True)] # optional plantri
+ [10, 10]
+ """
+- from sage.misc.package import is_package_installed
+- if not is_package_installed("plantri"):
++ import os
++ from sage.env import SAGE_LOCAL
++ if not os.path.isfile(os.path.join(SAGE_LOCAL, 'bin', 'plantri')):
+ raise TypeError("the optional plantri package is not installed")
+
+ # number of vertices should be positive
+diff --git a/src/sage/graphs/lovasz_theta.py b/src/sage/graphs/lovasz_theta.py
+index 0d345c9..60948d2 100644
+--- a/src/sage/graphs/lovasz_theta.py
++++ b/src/sage/graphs/lovasz_theta.py
+@@ -65,10 +65,9 @@ def lovasz_theta(graph):
+ from sage.misc.temporary_file import tmp_filename
+ import os, subprocess
+ from sage.env import SAGE_LOCAL
+- from sage.misc.package import is_package_installed, PackageNotFoundError
+
+- if not is_package_installed('csdp'):
+- raise PackageNotFoundError("csdp")
++ if not os.path.isfile(os.path.join(SAGE_LOCAL, 'bin', 'theta')):
++ raise NotImplementedError("You must install csdp before using this function")
+
+ g = graph.relabel(inplace=False, perm=range(1,n+1)).networkx_graph()
+ tf_name = tmp_filename()
+diff --git a/src/sage/groups/generic.py b/src/sage/groups/generic.py
+index c801636..f43e6d9 100644
+--- a/src/sage/groups/generic.py
++++ b/src/sage/groups/generic.py
+@@ -1400,15 +1400,15 @@ def structure_description(G, latex=False):
+ sage: groups.matrix.GL(4,2).structure_description() # optional - database_gap
+ 'A8'
+ """
+- import re
+- from sage.misc.package import is_package_installed
++ import re, os
++ from sage.env import SAGE_LOCAL
+ def correct_dihedral_degree(match):
+ return "%sD%d" % (match.group(1), int(match.group(2))/2)
+
+ try:
+ description = str(G._gap_().StructureDescription())
+ except RuntimeError:
+- if not is_package_installed('database_gap'):
++ if not os.path.isfile(os.path.join(SAGE_LOCAL, "lib", "gap", "small", "readsml.g")):
+ raise RuntimeError("You must install the optional database_gap package first.")
+ raise
+
+diff --git a/src/sage/groups/perm_gps/permgroup.py b/src/sage/groups/perm_gps/permgroup.py
+index e42db61..d4d5684 100644
+--- a/src/sage/groups/perm_gps/permgroup.py
++++ b/src/sage/groups/perm_gps/permgroup.py
+@@ -145,7 +145,6 @@ from sage.groups.perm_gps.permgroup_element import PermutationGroupElement, stan
+ from sage.groups.abelian_gps.abelian_group import AbelianGroup
+ from sage.misc.cachefunc import cached_method
+ from sage.groups.class_function import ClassFunction
+-from sage.misc.package import is_package_installed
+ from sage.sets.finite_enumerated_set import FiniteEnumeratedSet
+ from sage.categories.all import FiniteEnumeratedSets
+ from sage.groups.conjugacy_classes import ConjugacyClassGAP
+@@ -190,8 +189,6 @@ def hap_decorator(f):
+ """
+ @wraps(f)
+ def wrapped(self, n, p=0):
+- if not is_package_installed('gap_packages'):
+- raise RuntimeError("You must install the optional gap_packages package.")
+ load_hap()
+ from sage.arith.all import is_prime
+ if not (p == 0 or is_prime(p)):
+@@ -1682,9 +1679,7 @@ class PermutationGroup_generic(group.FiniteGroup):
+ try:
+ return [Integer(n) for n in self._gap_().IdGroup()]
+ except RuntimeError:
+- if not is_package_installed('database_gap'):
+- raise RuntimeError("You must install the optional database_gap package first.")
+- raise
++ raise RuntimeError("You must install the optional gap_packages package.")
+
+ def id(self):
+ """
+@@ -1735,9 +1730,7 @@ class PermutationGroup_generic(group.FiniteGroup):
+ try:
+ return Integer(self._gap_().PrimitiveIdentification())
+ except RuntimeError:
+- if not is_package_installed('database_gap'):
+- raise RuntimeError("You must install the optional database_gap package first.")
+- raise
++ raise RuntimeError("You must install the optional gap_packages package.")
+
+ def center(self):
+ """
+@@ -4113,8 +4106,6 @@ class PermutationGroup_generic(group.FiniteGroup):
+ - David Joyner and Graham Ellis
+
+ """
+- if not is_package_installed('gap_packages'):
+- raise RuntimeError("You must install the optional gap_packages package.")
+ load_hap()
+ from sage.arith.all import is_prime
+ if not (p == 0 or is_prime(p)):
+diff --git a/src/sage/misc/all.py b/src/sage/misc/all.py
+index 90e6985..21daeb0 100644
+--- a/src/sage/misc/all.py
++++ b/src/sage/misc/all.py
+@@ -53,10 +53,6 @@ from fpickle import pickle_function, unpickle_function
+
+ from .dist import install_scripts
+
+-from .package import (installed_packages, is_package_installed,
+- standard_packages, optional_packages, experimental_packages,
+- package_versions)
+-
+ from .pager import pager
+
+ lazy_import('sage.misc.sagedoc', ['browse_sage_doc',
+diff --git a/src/sage/rings/polynomial/multi_polynomial_sequence.py b/src/sage/rings/polynomial/multi_polynomial_sequence.py
+index da41cb0..49cae0b 100644
+--- a/src/sage/rings/polynomial/multi_polynomial_sequence.py
++++ b/src/sage/rings/polynomial/multi_polynomial_sequence.py
+@@ -163,7 +163,6 @@ from sage.misc.cachefunc import cached_method
+
+ from types import GeneratorType
+ from sage.misc.converting_dict import KeyConvertingDict
+-from sage.misc.package import is_package_installed
+
+ from sage.structure.sequence import Sequence, Sequence_generic
+
+@@ -1433,10 +1432,11 @@ class PolynomialSequence_gf2(PolynomialSequence_generic):
+
+ if S != []:
+ if algorithm == "exhaustive_search":
+- if not is_package_installed('fes'):
+- from sage.misc.package import PackageNotFoundError
+- raise PackageNotFoundError("fes")
+- from sage.libs.fes import exhaustive_search
++ try:
++ from sage.libs.fes import exhaustive_search
++ except ImportError:
++ raise RuntimeError("You must install the optional fes package.")
++
+ solutions = exhaustive_search(S, max_sols=n, verbose=verbose, **kwds)
+
+ elif algorithm == "polybori":
Copied: sagemath-doc/repos/community-testing-any/package.patch (from rev 218968, sagemath-doc/trunk/package.patch)
===================================================================
--- community-testing-any/package.patch (rev 0)
+++ community-testing-any/package.patch 2017-03-25 17:49:35 UTC (rev 218969)
@@ -0,0 +1,38 @@
+--- src/sage/misc/package.py.orig 2014-11-23 15:58:13.000000000 +0100
++++ src/sage/misc/package.py 2015-01-22 20:32:25.651383902 +0100
+@@ -343,7 +343,7 @@
+ sage: for pkg in list_packages('pip', local=True):
+ ....: assert not is_package_installed(pkg)
+ """
+- return any(p.split('-')[0] == package for p in installed_packages(exclude_pip))
++ return True
+
+ def package_versions(package_type, local=False):
+ r"""
+--- src/sage_setup/optional_extension.py.orig 2016-10-19 18:35:10.092577510 +0000
++++ src/sage_setup/optional_extension.py 2016-10-19 18:38:13.514765366 +0000
+@@ -21,8 +21,6 @@
+ from distutils.extension import Extension
+ from sage.misc.package import is_package_installed, list_packages
+
+-all_packages = list_packages(local=True)
+-
+
+ class CythonizeExtension(Extension):
+ """
+@@ -76,14 +74,7 @@
+ condition = kwds.pop("condition")
+ except KeyError:
+ pkg = kwds.pop("package")
+- try:
+- pkginfo = all_packages[pkg]
+- except KeyError:
+- # Might be an installed old-style package
+- condition = is_package_installed(pkg)
+- else:
+- condition = (pkginfo["installed_version"] == pkginfo["remote_version"])
+-
++ condition = True
+ if condition:
+ return Extension(*args, **kwds)
+ else:
Copied: sagemath-doc/repos/community-testing-any/r-no-readline.patch (from rev 218968, sagemath-doc/trunk/r-no-readline.patch)
===================================================================
--- community-testing-any/r-no-readline.patch (rev 0)
+++ community-testing-any/r-no-readline.patch 2017-03-25 17:49:35 UTC (rev 218969)
@@ -0,0 +1,11 @@
+--- a/src/sage/interfaces/r.py
++++ b/src/sage/interfaces/r.py
+@@ -331,7 +331,7 @@
+ prompt = '> ', #default, later comes the change
+
+ # This is the command that starts up your program
+- command = "R --vanilla --quiet",
++ command = "R --no-readline --vanilla --quiet",
+
+ server=server,
+ server_tmpdir=server_tmpdir,
Copied: sagemath-doc/repos/community-testing-any/sagemath-planarity3.patch (from rev 218968, sagemath-doc/trunk/sagemath-planarity3.patch)
===================================================================
--- community-testing-any/sagemath-planarity3.patch (rev 0)
+++ community-testing-any/sagemath-planarity3.patch 2017-03-25 17:49:35 UTC (rev 218969)
@@ -0,0 +1,113 @@
+Author: Ximin Luo <infinity0 at debian.org>
+Bug: https://trac.sagemath.org/ticket/21774
+---
+This patch header follows DEP-3: http://dep.debian.net/deps/dep3/
+--- a/sage/src/sage/graphs/planarity.pyx
++++ b/sage/src/sage/graphs/planarity.pyx
+@@ -3,13 +3,19 @@
+ """
+
+ cdef extern from "planarity/graph.h":
+- ctypedef struct graphNode:
+- int v
++ ctypedef struct vertexRec:
+ int link[2]
+- ctypedef graphNode * graphNodeP
++ int index
++ ctypedef vertexRec * vertexRecP
++
++ ctypedef struct edgeRec:
++ int link[2]
++ int neighbor
++ ctypedef edgeRec * edgeRecP
+
+ ctypedef struct BM_graph:
+- graphNodeP G
++ vertexRecP V
++ edgeRecP E
+ int N
+ ctypedef BM_graph * graphP
+
+@@ -93,15 +99,16 @@
+ g._pos = { u: [0,0], v: [0,1] }
+ return (True, None) if kuratowski else True
+
+- # create to and from mappings to relabel vertices to the set {0,...,n-1}
++ # create to and from mappings to relabel vertices to the set {1,...,n}
++ # (planarity 3 uses 1-based array indexing, with 0 representing NIL)
+ cdef int i
+ listto = g.vertices()
+ ffrom = {}
+ for vvv in listto:
+- ffrom[vvv] = listto.index(vvv)
++ ffrom[vvv] = listto.index(vvv) + 1
+ to = {}
+ for i from 0 <= i < len(listto):
+- to[i] = listto[i]
++ to[i + 1] = listto[i]
+ g.relabel(ffrom)
+
+ cdef graphP theGraph
+@@ -125,7 +132,7 @@
+ status = gp_Embed(theGraph, EMBEDFLAGS_PLANAR)
+ gp_SortVertices(theGraph)
+
+- # use to and from mappings to relabel vertices back from the set {0,...,n-1}
++ # use to and from mappings to relabel vertices back from the set {1,...,n}
+ g.relabel(to)
+
+ if status == NOTOK:
+@@ -134,12 +141,12 @@
+ # Kuratowski subgraph isolator
+ g_dict = {}
+ from sage.graphs.graph import Graph
+- for i from 0 <= i < theGraph.N:
++ for i from 0 < i <= theGraph.N:
+ linked_list = []
+- j = theGraph.G[i].link[1]
+- while j >= theGraph.N:
+- linked_list.append(to[theGraph.G[j].v])
+- j = theGraph.G[j].link[1]
++ j = theGraph.V[i].link[1]
++ while j:
++ linked_list.append(to[theGraph.E[j].neighbor])
++ j = theGraph.E[j].link[1]
+ if len(linked_list) > 0:
+ g_dict[to[i]] = linked_list
+ G = Graph(g_dict)
+@@ -153,12 +160,12 @@
+ if set_embedding:
+ emb_dict = {}
+ #for i in range(theGraph.N):
+- for i from 0 <= i < theGraph.N:
++ for i from 0 < i <= theGraph.N:
+ linked_list = []
+- j = theGraph.G[i].link[1]
+- while j >= theGraph.N:
+- linked_list.append(to[theGraph.G[j].v])
+- j = theGraph.G[j].link[1]
++ j = theGraph.V[i].link[1]
++ while j:
++ linked_list.append(to[theGraph.E[j].neighbor])
++ j = theGraph.E[j].link[1]
+ emb_dict[to[i]] = linked_list
+ g._embedding = emb_dict
+ if set_pos:
+@@ -174,12 +181,12 @@
+
+ emb_dict = {}
+ #for i in range(theGraph.N):
+- for i from 0 <= i < theGraph.N:
++ for i from 0 < i <= theGraph.N:
+ linked_list = []
+- j = theGraph.G[i].link[0]
+- while j >= theGraph.N:
+- linked_list.append(to[theGraph.G[j].v])
+- j = theGraph.G[j].link[0]
++ j = theGraph.V[i].link[0]
++ while j:
++ linked_list.append(to[theGraph.E[j].neighbor])
++ j = theGraph.E[j].link[0]
+ emb_dict[to[i]] = linked_list
+ g._embedding = emb_dict
+ gp_Free(&theGraph)
Copied: sagemath-doc/repos/community-testing-any/sagemath-singular-4.1.0.p2.patch (from rev 218968, sagemath-doc/trunk/sagemath-singular-4.1.0.p2.patch)
===================================================================
--- community-testing-any/sagemath-singular-4.1.0.p2.patch (rev 0)
+++ community-testing-any/sagemath-singular-4.1.0.p2.patch 2017-03-25 17:49:35 UTC (rev 218969)
@@ -0,0 +1,33 @@
+--- src/sage/libs/singular/decl.pxd.orig 2017-02-21 07:58:27.088118954 +0000
++++ src/sage/libs/singular/decl.pxd 2017-02-21 07:59:01.794846500 +0000
+@@ -484,8 +484,8 @@
+
+ ring *rDefault(int char , int nvars, char **names)
+ ring *rDefault(const n_Procs_s* cf, int nvars, char **names)
+- ring *rDefault(int ch , int nvars, char **names,int ord_size, int *ord, int *block0, int *block1, int **wvhdl)
+- ring *rDefault(const n_Procs_s* cf, int nvars, char **names,int ord_size, int *ord, int *block0, int *block1, int **wvhdl)
++ ring *rDefault(int ch , int nvars, char **names,int ord_size, rRingOrder_t *ord, int *block0, int *block1, int **wvhdl)
++ ring *rDefault(const n_Procs_s* cf, int nvars, char **names,int ord_size, rRingOrder_t *ord, int *block0, int *block1, int **wvhdl)
+
+
+
+--- src/sage/libs/singular/ring.pyx.orig 2017-02-21 07:24:23.197906897 +0000
++++ src/sage/libs/singular/ring.pyx 2017-02-21 07:29:23.731763098 +0000
+@@ -21,7 +21,7 @@
+ from sage.libs.singular.decl cimport number, poly, ring, currRing
+ from sage.libs.singular.decl cimport rChangeCurrRing, rCopy0, rComplete, rDelete, idInit
+ from sage.libs.singular.decl cimport omAlloc0, omStrDup, omAlloc, omAlloc0Bin, sip_sring_bin, rnumber_bin
+-from sage.libs.singular.decl cimport ringorder_dp, ringorder_Dp, ringorder_lp, ringorder_rp, ringorder_ds, ringorder_Ds, ringorder_ls, ringorder_M, ringorder_C, ringorder_wp, ringorder_Wp, ringorder_ws, ringorder_Ws, ringorder_a
++from sage.libs.singular.decl cimport ringorder_dp, ringorder_Dp, ringorder_lp, ringorder_rp, ringorder_ds, ringorder_Ds, ringorder_ls, ringorder_M, ringorder_C, ringorder_wp, ringorder_Wp, ringorder_ws, ringorder_Ws, ringorder_a, rRingOrder_t
+ from sage.libs.singular.decl cimport p_Copy, prCopyR
+ from sage.libs.singular.decl cimport n_unknown, n_Zp, n_Q, n_R, n_GF, n_long_R, n_algExt,n_transExt,n_long_C, n_Z, n_Zn, n_Znm, n_Z2m, n_CF
+ from sage.libs.singular.decl cimport n_coeffType, cfInitCharProc
+@@ -165,7 +165,7 @@
+ ## q q : GF(q=p^n) *names TRUE (todo)
+
+ _wvhdl = <int **>omAlloc0((nblcks + 2) * sizeof(int *))
+- _order = <int *>omAlloc0((nblcks + 2) * sizeof(int))
++ _order = <rRingOrder_t *>omAlloc0((nblcks + 2) * sizeof(int))
+ _block0 = <int *>omAlloc0((nblcks + 2) * sizeof(int))
+ _block1 = <int *>omAlloc0((nblcks + 2) * sizeof(int))
+
Copied: sagemath-doc/repos/community-testing-any/sagemath-sphinx-1.5.patch (from rev 218968, sagemath-doc/trunk/sagemath-sphinx-1.5.patch)
===================================================================
--- community-testing-any/sagemath-sphinx-1.5.patch (rev 0)
+++ community-testing-any/sagemath-sphinx-1.5.patch 2017-03-25 17:49:35 UTC (rev 218969)
@@ -0,0 +1,149 @@
+diff --git a/src/doc/common/conf.py b/src/doc/common/conf.py
+index 564407b..7ec52df 100644
+--- a/src/doc/common/conf.py
++++ b/src/doc/common/conf.py
+@@ -308,6 +308,7 @@ latex_elements['preamble'] = r"""
+ \usepackage{amssymb}
+ \usepackage{textcomp}
+ \usepackage{mathrsfs}
++\usepackage{iftex}
+
+ % Only declare unicode characters when compiling with pdftex; E.g. japanese
+ % tutorial does not use pdftex
+diff --git a/src/sage/homology/simplicial_complex.py b/src/sage/homology/simplicial_complex.py
+index c110648..462d0bf 100644
+--- a/src/sage/homology/simplicial_complex.py
++++ b/src/sage/homology/simplicial_complex.py
+@@ -195,8 +195,8 @@ def lattice_paths(t1, t2, length=None):
+ :param length: if not ``None``, then an integer, the length of the desired
+ path.
+ :type length: integer or ``None``; optional, default ``None``
+- :type t1: tuple, list, other iterable
+- :type t2: tuple, list, other iterable
++ :type t1: list, other iterable
++ :type t2: list, other iterable
+ :return: list of lists of vertices making up the paths as described above
+ :rtype: list of lists
+
+@@ -333,7 +333,7 @@ class Simplex(SageObject):
+ tuple of the vertices.
+
+ :param X: set of vertices
+- :type X: integer or list, tuple, or other iterable
++ :type X: integer, list, other iterable
+ :return: simplex with those vertices
+
+ ``X`` may be a non-negative integer `n`, in which case the
+diff --git a/src/sage_setup/docbuild/__init__.py b/src/sage_setup/docbuild/__init__.py
+index c155b4e..b93e743 100644
+--- a/src/sage_setup/docbuild/__init__.py
++++ b/src/sage_setup/docbuild/__init__.py
+@@ -1578,32 +1578,6 @@ class IntersphinxCache:
+ return i
+
+
+-def patch_domain_init():
+- """
+- Applies a monkey-patch to the __init__ method of the Domain class in
+- Sphinx, in order to work around a bug.
+-
+- See https://trac.sagemath.org/ticket/21044 as well as
+- https://github.com/sphinx-doc/sphinx/pull/2816 for details about that
+- bug.
+- """
+-
+- from sphinx.domains import Domain
+- import copy
+-
+- orig_init = Domain.__init__
+-
+- def __init__(self, *args, **kwargs):
+- orig_init(self, *args, **kwargs)
+-
+- # Replace the original initial_data class attribute with a new
+- # deep-copy of itself, since the bug will cause the original
+- # initial_data to be modified in-place
+- self.__class__.initial_data = copy.deepcopy(self.initial_data)
+-
+- Domain.__init__ = __init__
+-
+-
+ def main():
+ # Parse the command-line.
+ parser = setup_parser()
+@@ -1653,8 +1627,6 @@ def main():
+
+ ABORT_ON_ERROR = not options.keep_going
+
+- patch_domain_init()
+-
+ # Delete empty directories. This is needed in particular for empty
+ # directories due to "git checkout" which never deletes empty
+ # directories it leaves behind. See Trac #20010.
+diff --git a/src/sage_setup/docbuild/ext/multidocs.py b/src/sage_setup/docbuild/ext/multidocs.py
+index 63dbb71..47b2321 100644
+--- a/src/sage_setup/docbuild/ext/multidocs.py
++++ b/src/sage_setup/docbuild/ext/multidocs.py
+@@ -3,8 +3,6 @@
+ multi documentation in Sphinx
+ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
+
+- This is a slightly hacked-up version of the Sphinx-multidoc plugin
+-
+ The goal of this extension is to manage a multi documentation in Sphinx.
+ To be able to compile Sage's huge documentation in parallel, the
+ documentation is cut into a bunch of independent documentations called
+@@ -57,7 +55,7 @@ def merge_environment(app, env):
+ app.info(" %s todos, %s index, %s citations"%(
+ len(docenv.todo_all_todos),
+ len(docenv.indexentries),
+- len(docenv.citations)
++ len(docenv.domaindata["std"]["citations"])
+ ), nonl=1)
+
+ # merge titles
+@@ -88,10 +86,10 @@ def merge_environment(app, env):
+ env.metadata[ind] = md
+ # merge the citations
+ newcite = {}
+- for ind, (path, tag) in six.iteritems(docenv.citations):
++ for ind, (path, tag) in six.iteritems(docenv.domaindata["std"]["citations"]):
+ # TODO: Warn on conflicts
+ newcite[ind] = (fixpath(path), tag)
+- env.citations.update(newcite)
++ env.domaindata["std"]["citations"].update(newcite)
+ # merge the py:module indexes
+ newmodules = {}
+ for ind,(modpath,v1,v2,v3) in (
+@@ -102,9 +100,9 @@ def merge_environment(app, env):
+ app.info('... done (%s todos, %s index, %s citations, %s modules)'%(
+ len(env.todo_all_todos),
+ len(env.indexentries),
+- len(env.citations),
++ len(env.domaindata["std"]["citations"]),
+ len(env.domaindata['py']['modules'])))
+- write_citations(app, env.citations)
++ write_citations(app, env.domaindata["std"]["citations"])
+
+ def get_env(app, curdoc):
+ """
+@@ -146,6 +144,10 @@ def merge_js_index(app):
+ titles = app.builder.indexer._titles
+ for (res, title) in six.iteritems(index._titles):
+ titles[fixpath(res)] = title
++ # merge the filenames
++ filenames = app.builder.indexer._filenames
++ for (res, filename) in six.iteritems(index._filenames):
++ filenames[fixpath(res)] = filename
+ # TODO: merge indexer._objtypes, indexer._objnames as well
+
+ # Setup source symbolic links
+@@ -244,7 +246,7 @@ def fetch_citation(app, env):
+ with open(filename, 'rb') as f:
+ cache = cPickle.load(f)
+ app.builder.info("done (%s citations)."%len(cache))
+- cite = env.citations
++ cite = env.domaindata["std"]["citations"]
+ for ind, (path, tag) in six.iteritems(cache):
+ if ind not in cite: # don't override local citation
+ cite[ind]=(os.path.join("..", path), tag)
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