[arch-commits] Commit in hdf5-openmpi/trunk (PKGBUILD)

[Bruno Pagani]

    Date: Thursday, August 23, 2018 @ 20:42:22
  Author: archange
Revision: 373479

upgpkg: hdf5-openmpi 1.10.3-1

Modified:
  hdf5-openmpi/trunk/PKGBUILD

----------+
 PKGBUILD |   84 +++++++++++++++++++++++++++----------------------------------
 1 file changed, 38 insertions(+), 46 deletions(-)

Modified: PKGBUILD
===================================================================
--- PKGBUILD	2018-08-23 20:36:20 UTC (rev 373478)
+++ PKGBUILD	2018-08-23 20:42:22 UTC (rev 373479)
@@ -10,78 +10,70 @@
 _pkgname=hdf5
 _mpi=openmpi
 pkgname=${_pkgname}-${_mpi}
-pkgver=1.10.2
-pkgrel=2
+pkgver=1.10.3
+pkgrel=1
 pkgdesc="General purpose library and file format for storing scientific data (${_mpi} version)"
 arch=('x86_64')
-url="https://www.hdfgroup.org/HDF5/"
+url="https://www.hdfgroup.org/hdf5"
 license=('custom')
 depends=('zlib' 'libaec' 'bash' 'openmpi')
-makedepends=('time' 'gcc-fortran')
+makedepends=('cmake' 'time' 'gcc-fortran')
 provides=('hdf5' 'hdf5-cpp-fortran' "hdf5-fortran-${_mpi}")
 conflicts=('hdf5')
 replaces=("hdf5-fortran-${_mpi}")
 source=("https://support.hdfgroup.org/ftp/HDF5/releases/${_pkgname}-${pkgver:0:4}/${_pkgname}-${pkgver/_/-}/src/${_pkgname}-${pkgver/_/-}.tar.bz2"
         'mpi.patch')
-md5sums=('41fb9347801b546fba323523a1c1af51'
+md5sums=('56c5039103c51a40e493b43c504ce982'
          'dfa8dd50b8a7ebb3ad7249c627156cf9')
-sha256sums=('1cad5b7bfdf128dfc53cd16fba48f6e7ae4e93c75c371d9ec8dfc4df0c1fcb71'
+sha256sums=('c65cdcce4724a57fd3f8da9f0d109b497be30092acb9fac634d1291190d905a9'
             '603006358175b7a8b35fa44c484cddf45c0381cf50db4fb7c50ea5969d361eca')
 
 prepare() {
+    mkdir -p build
+
     cd ${_pkgname}-${pkgver/_/-}
-    # Fix building with GCC 8.1
-    sed 's/\(.*\)(void) HDF_NO_UBSAN/HDF_NO_UBSAN \1(void)/' -i src/H5detect.c
-
     # FS#33343
     patch -p1 -i ../mpi.patch
 }
 
 build() {
-    cd ${_pkgname}-${pkgver/_/-}
-    ./configure \
-        CXX="mpicxx" \
-        CC="mpicc" \
-        FC="mpif90" \
-        F9X="mpif90" \
-        RUNPARALLEL="mpirun" \
-        OMPI_MCA_disable_memory_allocator=1 \
-        --prefix=/usr \
-        --docdir=/usr/share/doc/hdf5/ \
-        --disable-static \
-        --disable-sharedlib-rpath \
-        --enable-build-mode=production \
-        --enable-hl \
-        --enable-cxx \
-        --enable-fortran \
-        --enable-parallel \
-        --enable-unsupported \
-        --with-pic \
-        --with-zlib \
-        --with-szlib
-    make
+    cd build
+    CXX="mpicxx" \
+    CC="mpicc" \
+    FC="mpif90" \
+    F9X="mpif90" \
+    RUNPARALLEL="mpirun" \
+    OMPI_MCA_disable_memory_allocator=1 \
+    cmake ../${_pkgname}-${pkgver/_/-} \
+        -DCMAKE_INSTALL_PREFIX=/usr \
+        -DBUILD_SHARED_LIBS=ON \
+        -DCMAKE_BUILD_TYPE=Release \
+        -DALLOW_UNSUPPORTED=ON \
+        -DHDF5_BUILD_HL_LIB=ON \
+        -DHDF5_BUILD_CPP_LIB=ON \
+        -DHDF5_BUILD_FORTRAN=ON \
+        -DHDF5_ENABLE_PARALLEL=ON \
+        -DHDF5_ENABLE_Z_LIB_SUPPORT=ON \
+        -DHDF5_ENABLE_SZIP_SUPPORT=ON \
+        -DHDF5_ENABLE_SZIP_ENCODING=ON
+    cmake --build . --config Release
 }
 
 check() {
-    cd ${_pkgname}-${pkgver/_/-}
-    # Without this, checks are failing with messages like “error while loading shared libraries: libhdf5.so.101: cannot open shared object file: No such file or directory”
-    export LD_LIBRARY_PATH="${srcdir}"/${pkgname}-${pkgver/_/-}/src/.libs/
-    export LD_LIBRARY_PATH="$LD_LIBRARY_PATH":"${srcdir}"/${pkgname}-${pkgver/_/-}/c++/src/.libs/
-    export LD_LIBRARY_PATH="$LD_LIBRARY_PATH":"${srcdir}"/${pkgname}-${pkgver/_/-}/fortran/src/.libs/
-    export LD_LIBRARY_PATH="$LD_LIBRARY_PATH":"${srcdir}"/${pkgname}-${pkgver/_/-}/hl/src/.libs/
-    export LD_LIBRARY_PATH="$LD_LIBRARY_PATH":"${srcdir}"/${pkgname}-${pkgver/_/-}/hl/c++/src/.libs/
-    export LD_LIBRARY_PATH="$LD_LIBRARY_PATH":"${srcdir}"/${pkgname}-${pkgver/_/-}/hl/fortran/src/.libs/
-    # This is a parallel build, they are always OpenMPI bugs
-    make check || warning "Tests failed"
+    cd build
+    # Three expected test failures (https://support.hdfgroup.org/ftp/HDF5/releases/hdf5-1.10/hdf5-1.10.3/src/hdf5-1.10.3-RELEASE.txt, Known Problems):
+    #   142 - TEST_PAR_testphdf5 (Failed)
+    #   146 - TEST_PAR_t_cache_image (Timeout)
+    #   153 - TEST_PAR_t_shapesame (Failed)
+    ctest . -C Release || warning "Tests failed"
 }
 
 package() {
-    cd ${_pkgname}-${pkgver/_/-}
+    cd build
 
     make DESTDIR="${pkgdir}" install
 
-    install -dm755 "${pkgdir}"/usr/share/doc/${_pkgname}
-    mv "${pkgdir}"/usr/share/{hdf5_examples,doc/${_pkgname}/examples}
-
-    install -Dm644 COPYING "${pkgdir}"/usr/share/licenses/${_pkgname}/LICENSE
+    install -d "${pkgdir}"/usr/share/licenses/${pkgname}
+    mv "${pkgdir}"/usr/share/COPYING "${pkgdir}"/usr/share/licenses/${pkgname}/
+    rm "${pkgdir}"/usr/share/{RELEASE,USING_HDF5_CMake}.txt
 }