[arch-commits] Commit in octave/repos (3 files)
Filipe Laíns
ffy00 at archlinux.org
Sun Apr 12 18:30:11 UTC 2020
Date: Sunday, April 12, 2020 @ 18:30:11
Author: ffy00
Revision: 613447
archrelease: copy trunk to community-staging-x86_64
Added:
octave/repos/community-staging-x86_64/
octave/repos/community-staging-x86_64/PKGBUILD
(from rev 613446, octave/trunk/PKGBUILD)
octave/repos/community-staging-x86_64/octave-sundials4.patch
(from rev 613446, octave/trunk/octave-sundials4.patch)
------------------------+
PKGBUILD | 52 ++++
octave-sundials4.patch | 599 +++++++++++++++++++++++++++++++++++++++++++++++
2 files changed, 651 insertions(+)
Copied: octave/repos/community-staging-x86_64/PKGBUILD (from rev 613446, octave/trunk/PKGBUILD)
===================================================================
--- community-staging-x86_64/PKGBUILD (rev 0)
+++ community-staging-x86_64/PKGBUILD 2020-04-12 18:30:11 UTC (rev 613447)
@@ -0,0 +1,52 @@
+# Maintainer: Ronald van Haren <ronald.archlinux.org>
+# Contributor : shining <shiningxc.at.gmail.com>
+# Contributor : cyberdune <cyberdune at gmail.com>
+
+pkgname=octave
+pkgver=5.2.0
+pkgrel=2
+pkgdesc="A high-level language, primarily intended for numerical computations."
+arch=('x86_64')
+url="https://www.gnu.org/software/octave/"
+license=('GPL')
+depends=('fftw' 'curl' 'graphicsmagick' 'glpk' 'hdf5' 'qhull' 'arpack' 'glu' 'ghostscript'
+ 'sundials' 'gl2ps' 'qscintilla-qt5' 'libsndfile' 'qt5-tools' 'qrupdate')
+makedepends=('gcc-fortran' 'texlive-core' 'suitesparse' 'texinfo' 'gnuplot' 'fltk' 'portaudio' 'jdk8-openjdk')
+optdepends=('texinfo: for help-support in octave'
+ 'gnuplot: alternative plotting'
+ 'portaudio: audio support'
+ 'java-runtime: java support'
+ 'fltk: FLTK GUI')
+source=(https://ftp.gnu.org/gnu/octave/octave-$pkgver.tar.gz{,.sig}
+ octave-sundials4.patch)
+options=('!emptydirs')
+validpgpkeys=('DBD9C84E39FE1AAE99F04446B05F05B75D36644B') # John W. Eaton
+sha256sums=('2fea62b3c78d6f38e9451da8a4d26023840725977dffee5250d3d180f56595e1'
+ 'SKIP'
+ 'bfa7253f7b572158ce05fee117cd24325ec73e7f3acbcc73b3c34d6e52f01f5a')
+
+prepare() {
+ cd $pkgname-$pkgver
+ patch -p1 -i ../octave-sundials4.patch # Fix sundials support https://savannah.gnu.org/bugs/?52475
+ autoreconf -vif
+}
+
+build() {
+ cd ${pkgname}-${pkgver}
+
+ ./configure --prefix=/usr --libexecdir=/usr/lib \
+ --enable-shared --disable-static \
+ --with-quantum-depth=16 \
+ --with-sundials_ida="-lsundials_ida -lsundials_sunlinsolklu"
+ make
+}
+
+package(){
+ cd "${srcdir}/${pkgname}-${pkgver}"
+
+ make DESTDIR="${pkgdir}" install
+
+ # add octave library path to ld.so.conf.d
+ install -d "${pkgdir}/etc/ld.so.conf.d"
+ echo "/usr/lib/${pkgname}/${pkgver}" > "${pkgdir}/etc/ld.so.conf.d/${pkgname}.conf"
+}
Copied: octave/repos/community-staging-x86_64/octave-sundials4.patch (from rev 613446, octave/trunk/octave-sundials4.patch)
===================================================================
--- community-staging-x86_64/octave-sundials4.patch (rev 0)
+++ community-staging-x86_64/octave-sundials4.patch 2020-04-12 18:30:11 UTC (rev 613447)
@@ -0,0 +1,599 @@
+# HG changeset patch
+# User Bill Greene <w.h.greene at gmail.com>
+# Date 1550229868 -3600
+# Fri Feb 15 12:24:28 2019 +0100
+# Node ID 4bf27c090f5695bcf545fc4af15e2a61a3941d46
+# Parent f034b29320ad5034ad5c66480f64411e9d773440
+Update DAE/IDE solvers to work with SUNDIALS 3 (bug #52475).
+
+* libinterp/dldfcn/__ode15__.cc : use SUNDIALS API version 3.x
+
+diff --git a/libinterp/dldfcn/__ode15__.cc b/libinterp/dldfcn/__ode15__.cc
+--- a/libinterp/dldfcn/__ode15__.cc
++++ b/libinterp/dldfcn/__ode15__.cc
+@@ -1,6 +1,7 @@
+ /*
+
+ Copyright (C) 2016-2019 Francesco Faccio <francesco.faccio at mail.polimi.it>
++Copyright (C) 2019 William Greene <w.h.greene at gmail.com>
+
+ This file is part of Octave.
+
+@@ -112,7 +113,8 @@
+ havejacsparse (false), mem (nullptr), num (), ida_fun (nullptr),
+ ida_jac (nullptr), dfdy (nullptr), dfdyp (nullptr), spdfdy (nullptr),
+ spdfdyp (nullptr), fun (nullptr), jacfun (nullptr), jacspfun (nullptr),
+- jacdcell (nullptr), jacspcell (nullptr)
++ jacdcell (nullptr), jacspcell (nullptr),
++ sunJacMatrix (nullptr), sunLinearSolver (nullptr)
+ { }
+
+
+@@ -122,11 +124,17 @@
+ havejacsparse (false), mem (nullptr), num (), ida_fun (ida_fcn),
+ ida_jac (nullptr), dfdy (nullptr), dfdyp (nullptr), spdfdy (nullptr),
+ spdfdyp (nullptr), fun (daefun), jacfun (nullptr), jacspfun (nullptr),
+- jacdcell (nullptr), jacspcell (nullptr)
++ jacdcell (nullptr), jacspcell (nullptr),
++ sunJacMatrix (nullptr), sunLinearSolver (nullptr)
+ { }
+
+
+- ~IDA (void) { IDAFree (&mem); }
++ ~IDA (void)
++ {
++ IDAFree (&mem);
++ SUNLinSolFree(sunLinearSolver);
++ SUNMatDestroy(sunJacMatrix);
++ }
+
+ IDA&
+ set_jacobian (octave_function *jac, DAEJacFuncDense j)
+@@ -184,7 +192,7 @@
+ static N_Vector ColToNVec (const ColumnVector& data, long int n);
+
+ void
+- set_up (void);
++ set_up (const ColumnVector& y);
+
+ void
+ set_tolerance (ColumnVector& abstol, realtype reltol);
+@@ -199,25 +207,24 @@
+ void
+ resfun_impl (realtype t, N_Vector& yy,
+ N_Vector& yyp, N_Vector& rr);
+-
+ static int
+- jacdense (long int Neq, realtype t, realtype cj, N_Vector yy,
+- N_Vector yyp, N_Vector, DlsMat JJ, void *user_data,
++ jacdense (realtype t, realtype cj, N_Vector yy,
++ N_Vector yyp, N_Vector, SUNMatrix JJ, void *user_data,
+ N_Vector, N_Vector, N_Vector)
+ {
+ IDA *self = static_cast <IDA *> (user_data);
+- self->jacdense_impl (Neq, t, cj, yy, yyp, JJ);
++ self->jacdense_impl (t, cj, yy, yyp, JJ);
+ return 0;
+ }
+
+ void
+- jacdense_impl (long int Neq, realtype t, realtype cj,
+- N_Vector& yy, N_Vector& yyp, DlsMat& JJ);
++ jacdense_impl (realtype t, realtype cj,
++ N_Vector& yy, N_Vector& yyp, SUNMatrix& JJ);
+
+ # if defined (HAVE_SUNDIALS_IDAKLU)
+ static int
+ jacsparse (realtype t, realtype cj, N_Vector yy, N_Vector yyp,
+- N_Vector, SlsMat Jac, void *user_data, N_Vector,
++ N_Vector, SUNMatrix Jac, void *user_data, N_Vector,
+ N_Vector, N_Vector)
+ {
+ IDA *self = static_cast <IDA *> (user_data);
+@@ -227,7 +234,7 @@
+
+ void
+ jacsparse_impl (realtype t, realtype cj, N_Vector& yy,
+- N_Vector& yyp, SlsMat& Jac);
++ N_Vector& yyp, SUNMatrix& Jac);
+ #endif
+
+ void set_maxstep (realtype maxstep);
+@@ -291,6 +298,8 @@
+ DAEJacFuncSparse jacspfun;
+ DAEJacCellDense jacdcell;
+ DAEJacCellSparse jacspcell;
++ SUNMatrix sunJacMatrix;
++ SUNLinearSolver sunLinearSolver;
+ };
+
+ int
+@@ -323,36 +332,61 @@
+ }
+
+ void
+- IDA::set_up (void)
++ IDA::set_up (const ColumnVector& y)
+ {
++ N_Vector yy = ColToNVec(y, num);
++
+ if (havejacsparse)
+ {
+ # if defined (HAVE_SUNDIALS_IDAKLU)
+- if (IDAKLU (mem, num, num*num, CSC_MAT) != 0)
+- error ("IDAKLU solver not initialized");
++
++ sunJacMatrix = SUNSparseMatrix (num, num, num*num, CSC_MAT);
++ if (! sunJacMatrix)
++ error ("Unable to create sparse Jacobian for Sundials");
++
++ sunLinearSolver = SUNKLU (yy, sunJacMatrix);
++ if (! sunLinearSolver)
++ error ("Unable to create KLU sparse solver");
+
+- IDASlsSetSparseJacFn (mem, IDA::jacsparse);
++ if (IDADlsSetLinearSolver (mem, sunLinearSolver, sunJacMatrix))
++ error ("Unable to set sparse linear solver");
++
++ IDADlsSetJacFn (mem, IDA::jacsparse);
++
+ # else
+- error ("IDAKLU is not available in this version of Octave");
++ error ("SUNDIALS SUNLINSOL KLU is not available in this version of Octave");
+ # endif
++
+ }
+ else
+ {
+- if (IDADense (mem, num) != 0)
+- error ("IDADense solver not initialized");
++
++ sunJacMatrix = SUNDenseMatrix (num, num);
++ if (! sunJacMatrix)
++ error ("Unable to create dense Jacobian for Sundials");
+
+- if (havejac && IDADlsSetDenseJacFn (mem, IDA::jacdense) != 0)
+- error ("Dense Jacobian not set");
++ sunLinearSolver = SUNDenseLinearSolver (yy, sunJacMatrix);
++ if (! sunLinearSolver)
++ error ("Unable to create dense linear solver");
++
++ if (IDADlsSetLinearSolver (mem, sunLinearSolver, sunJacMatrix))
++ error ("Unable to set dense linear solver");
++
++ if (havejac && IDADlsSetJacFn (mem, IDA::jacdense) != 0)
++ error ("Unable to set dense Jacobian function");
++
+ }
+ }
+
+ void
+- IDA::jacdense_impl (long int Neq, realtype t, realtype cj,
+- N_Vector& yy, N_Vector& yyp, DlsMat& JJ)
++ IDA::jacdense_impl (realtype t, realtype cj,
++ N_Vector& yy, N_Vector& yyp, SUNMatrix& JJ)
+
+ {
+ BEGIN_INTERRUPT_WITH_EXCEPTIONS;
+
++ long int Neq = NV_LENGTH_S(yy);
++
+ ColumnVector y = NVecToCol (yy, Neq);
+
+ ColumnVector yp = NVecToCol (yyp, Neq);
+@@ -366,7 +400,7 @@
+
+ std::copy (jac.fortran_vec (),
+ jac.fortran_vec () + jac.numel (),
+- JJ->data);
++ SUNDenseMatrix_Data(JJ));
+
+ END_INTERRUPT_WITH_EXCEPTIONS;
+ }
+@@ -374,7 +408,7 @@
+ # if defined (HAVE_SUNDIALS_IDAKLU)
+ void
+ IDA::jacsparse_impl (realtype t, realtype cj, N_Vector& yy, N_Vector& yyp,
+- SlsMat& Jac)
++ SUNMatrix& Jac)
+
+ {
+ BEGIN_INTERRUPT_WITH_EXCEPTIONS;
+@@ -390,17 +424,18 @@
+ else
+ jac = (*jacspcell) (spdfdy, spdfdyp, cj);
+
+- SparseSetMatToZero (Jac);
+- int *colptrs = *(Jac->colptrs);
+- int *rowvals = *(Jac->rowvals);
++ SUNMatZero_Sparse (Jac);
++ octave_idx_type *colptrs = SUNSparseMatrix_IndexPointers (Jac);
++ octave_idx_type *rowvals = SUNSparseMatrix_IndexValues (Jac);
+
+ for (int i = 0; i < num + 1; i++)
+ colptrs[i] = jac.cidx(i);
+
++ double *d = SUNSparseMatrix_Data (Jac);
+ for (int i = 0; i < jac.nnz (); i++)
+ {
+ rowvals[i] = jac.ridx(i);
+- Jac->data[i] = jac.data(i);
++ d[i] = jac.data(i);
+ }
+
+ END_INTERRUPT_WITH_EXCEPTIONS;
+@@ -567,7 +602,7 @@
+
+ //main loop
+ while (((posdirection == 1 && tsol < tend)
+- || (posdirection == 0 && tsol > tend))
++ || (posdirection == 0 && tsol > tend))
+ && status == 0)
+ {
+ if (IDASolve (mem, tend, &tsol, yy, yyp, IDA_ONE_STEP) != 0)
+@@ -692,7 +727,7 @@
+ // Linear interpolation
+ ie(0) = index(0);
+ te(0) = tsol - val (index(0)) * (tsol - told)
+- / (val (index(0)) - oldval (index(0)));
++ / (val (index(0)) - oldval (index(0)));
+
+ ColumnVector ytemp
+ = y - ((tsol - te(0)) * (y - yold) / (tsol - told));
+@@ -717,7 +752,7 @@
+ // Linear interpolation
+ ie(temp+i) = index(i);
+ te(temp+i) = tsol - val(index(i)) * (tsol - told)
+- / (val(index(i)) - oldval(index(i)));
++ / (val(index(i)) - oldval(index(i)));
+
+ ColumnVector ytemp
+ = y - (tsol - te (temp + i)) * (y - yold) / (tsol - told);
+@@ -1096,7 +1131,7 @@
+ event_fcn = options.getfield("Events").function_value ();
+
+ // Set up linear solver
+- dae.set_up ();
++ dae.set_up (y0);
+
+ // Integrate
+ retval = dae.integrate (numt, tspan, y0, yp0, refine,
+# HG changeset patch
+# User Carlo de Falco <carlo.defalco at polimi.it>
+# Date 1550230515 -3600
+# Fri Feb 15 12:35:15 2019 +0100
+# Node ID 9b27b77d2fec1a334baa7f4b2ec70751f4bf2b99
+# Parent 4bf27c090f5695bcf545fc4af15e2a61a3941d46
+Update detection of sundials in the build system (bug #52475).
+
+* m4/acnclude.m4 : check for sunlinsol_klu.h and sunlinsol_dense.h
+* configure.ac : update check for sundials features
+* script/ode/ode15i.m : update conditionals in tests
+* script/ode/ode15s.m : update conditionals in tests
+* libinterp/dldfcn/__ode15__.cc : udate conditionals in preprocessor directives
+
+diff --git a/configure.ac b/configure.ac
+--- a/configure.ac
++++ b/configure.ac
+@@ -2206,15 +2206,15 @@
+ [], [don't use SUNDIALS IDA library, solvers ode15i and ode15s will be disabled],
+ [warn_sundials_ida=
+ OCTAVE_CHECK_SUNDIALS_SIZEOF_REALTYPE
+- OCTAVE_CHECK_SUNDIALS_IDA_DENSE
+- OCTAVE_CHECK_SUNDIALS_IDAKLU])
++ OCTAVE_CHECK_SUNDIALS_SUNLINSOL_DENSE
++ OCTAVE_CHECK_SUNDIALS_SUNLINSOL_KLU])
+ LIBS="$save_LIBS"
+
+ dnl Define this way instead of with an #if in oct-conf-post.h so that
+ dnl the build features script will get the correct value.
+ if test -n "$SUNDIALS_IDA_LIBS" \
+ && test -n "$SUNDIALS_NVECSERIAL_LIBS" \
+- && test $octave_cv_sundials_ida_dense = yes \
++ && test $octave_cv_sundials_sunlinsol_dense = yes \
+ && test $octave_cv_sundials_realtype_is_double = yes; then
+ AC_DEFINE(HAVE_SUNDIALS, 1, [Define to 1 if SUNDIALS is available.])
+ fi
+diff --git a/libinterp/dldfcn/__ode15__.cc b/libinterp/dldfcn/__ode15__.cc
+--- a/libinterp/dldfcn/__ode15__.cc
++++ b/libinterp/dldfcn/__ode15__.cc
+@@ -45,15 +45,31 @@
+ # include <ida/ida.h>
+ # endif
+
+-# if defined (HAVE_IDA_IDA_DENSE_H)
+-# include <ida/ida_dense.h>
++# if defined (HAVE_SUNDIALS_SUNDIALS_MATRIX_H)
++# include <sundials/sundials_matrix.h>
++# endif
++
++# if defined (HAVE_SUNDIALS_SUNDIALS_LINEARSOLVER_H)
++# include <sundials/sundials_linearsolver.h>
++# endif
++
++# if defined (HAVE_SUNLINSOL_SUNLINSOL_DENSE_H)
++# include <sunlinsol/sunlinsol_dense.h>
+ # endif
+
+-# if defined (HAVE_IDA_IDA_KLU_H)
+-# include <ida/ida_klu.h>
++# if defined (HAVE_IDA_IDA_DIRECT_H)
++# include <ida/ida_direct.h>
++# endif
++
++# if defined (HAVE_SUNDIALS_SUNDIALS_SPARSE_H)
+ # include <sundials/sundials_sparse.h>
+ # endif
+
++
++# if defined (HAVE_SUNLINSOL_SUNLINSOL_KLU_H)
++# include <sunlinsol/sunlinsol_klu.h>
++# endif
++
+ # if defined (HAVE_NVECTOR_NVECTOR_SERIAL_H)
+ # include <nvector/nvector_serial.h>
+ # endif
+@@ -221,7 +237,7 @@
+ jacdense_impl (realtype t, realtype cj,
+ N_Vector& yy, N_Vector& yyp, SUNMatrix& JJ);
+
+-# if defined (HAVE_SUNDIALS_IDAKLU)
++# if defined (HAVE_SUNDIALS_SUNLINSOL_KLU)
+ static int
+ jacsparse (realtype t, realtype cj, N_Vector yy, N_Vector yyp,
+ N_Vector, SUNMatrix Jac, void *user_data, N_Vector,
+@@ -338,7 +354,7 @@
+
+ if (havejacsparse)
+ {
+-# if defined (HAVE_SUNDIALS_IDAKLU)
++#if defined (HAVE_SUNDIALS_SUNLINSOL_KLU)
+
+ sunJacMatrix = SUNSparseMatrix (num, num, num*num, CSC_MAT);
+ if (! sunJacMatrix)
+@@ -405,7 +421,7 @@
+ END_INTERRUPT_WITH_EXCEPTIONS;
+ }
+
+-# if defined (HAVE_SUNDIALS_IDAKLU)
++# if defined (HAVE_SUNDIALS_SUNLINSOL_KLU)
+ void
+ IDA::jacsparse_impl (realtype t, realtype cj, N_Vector& yy, N_Vector& yyp,
+ SUNMatrix& Jac)
+diff --git a/m4/acinclude.m4 b/m4/acinclude.m4
+--- a/m4/acinclude.m4
++++ b/m4/acinclude.m4
+@@ -2210,14 +2210,11 @@
+ dnl precision realtype.
+ dnl
+ AC_DEFUN([OCTAVE_CHECK_SUNDIALS_SIZEOF_REALTYPE], [
+- AC_CHECK_HEADERS([ida/ida.h ida.h])
+ AC_CACHE_CHECK([whether SUNDIALS IDA is configured with double precision realtype],
+ [octave_cv_sundials_realtype_is_double],
+ [AC_COMPILE_IFELSE([AC_LANG_PROGRAM([[
+ #if defined (HAVE_IDA_IDA_H)
+ #include <ida/ida.h>
+- #else
+- #include <ida.h>
+ #endif
+ #include <assert.h>
+ ]], [[
+@@ -2233,61 +2230,72 @@
+ fi
+ ])
+ dnl
+-dnl Check whether SUNDIALS IDA library is configured with IDAKLU
++dnl Check whether SUNDIALS IDA library is configured with SUNLINSOL_KLU
+ dnl enabled.
+ dnl
+-AC_DEFUN([OCTAVE_CHECK_SUNDIALS_IDAKLU], [
+- AC_CHECK_HEADERS([ida/ida_klu.h ida_klu.h])
+- AC_CACHE_CHECK([whether SUNDIALS IDA is configured with IDAKLU enabled],
+- [octave_cv_sundials_idaklu],
++AC_DEFUN([OCTAVE_CHECK_SUNDIALS_SUNLINSOL_KLU], [
++ AC_CHECK_HEADERS([sundials/sundials_sparse.h sunlinsol/sunlinsol_klu.h])
++ AC_CACHE_CHECK([whether SUNDIALS IDA is configured with SUNLINSOL_KLU enabled],
++ [octave_cv_sundials_sunlinsol_klu],
+ [AC_COMPILE_IFELSE([AC_LANG_PROGRAM([[
+- #if defined (HAVE_IDA_IDA_KLU_H)
+- #include <ida/ida_klu.h>
+- #else
+- #include <ida_klu.h>
++ #if defined (HAVE_IDA_IDA_H)
++ #include <ida/ida.h>
++ #endif
++ #if defined (HAVE_SUNDIALS_SUNDIALS_SPARSE_H)
++ #include <sundials/sundials_sparse.h>
++ #endif
++ #if defined (HAVE_SUNLINSOL_SUNLINSOL_KLU_H)
++ #include <sunlinsol/sunlinsol_klu.h>
+ #endif
+ ]], [[
+- IDAKLU (0, 0, 0, 0);
++ SUNKLU (0, 0);
+ ]])],
+- octave_cv_sundials_idaklu=yes,
+- octave_cv_sundials_idaklu=no)
++ octave_cv_sundials_sunlinsol_klu=yes,
++ octave_cv_sundials_sunlinsol_klu=no)
+ ])
+- if test $octave_cv_sundials_idaklu = yes; then
+- AC_DEFINE(HAVE_SUNDIALS_IDAKLU, 1,
+- [Define to 1 if SUNDIALS IDA is configured with IDAKLU enabled.])
++ if test $octave_cv_sundials_sunlinsol_klu = yes; then
++ AC_DEFINE(HAVE_SUNDIALS_SUNLINSOL_KLU, 1,
++ [Define to 1 if SUNDIALS IDA is configured with SUNLINSOL_KLU enabled.])
+ else
+- warn_sundials_idaklu="SUNDIALS IDA library not configured with IDAKLU, ode15i and ode15s will not support the sparse Jacobian feature"
+- OCTAVE_CONFIGURE_WARNING([warn_sundials_idaklu])
++ warn_sundials_idaklu="SUNDIALS IDA library not configured with SUNLINSOL_KLU, ode15i and ode15s will not support the sparse Jacobian feature"
++ OCTAVE_CONFIGURE_WARNING([warn_sundials_sunlinsol_klu])
+ fi
+ ])
+ dnl
+-dnl Check whether SUNDIALS IDA library has the IDADENSE linear solver.
++dnl Check whether SUNDIALS IDA library has the SUNLINSOL_DENSE linear solver.
+ dnl The IDADENSE API was removed in SUNDIALS version 3.0.0.
+ dnl
+-AC_DEFUN([OCTAVE_CHECK_SUNDIALS_IDA_DENSE], [
+- AC_CHECK_HEADERS([ida/ida_dense.h ida_dense.h])
+- AC_CACHE_CHECK([whether SUNDIALS IDA includes the IDADENSE linear solver],
+- [octave_cv_sundials_ida_dense],
++AC_DEFUN([OCTAVE_CHECK_SUNDIALS_SUNLINSOL_DENSE], [
++ AC_CHECK_HEADERS([sunlinsol/sunlinsol_dense.h sundials/sundials_matrix.h sundials/sundials_linearsolver.h ida/ida_direct.h])
++ AC_CACHE_CHECK([whether SUNDIALS IDA includes the SUNLINSOL_DENSE linear solver],
++ [octave_cv_sundials_sunlinsol_dense],
+ [AC_COMPILE_IFELSE([AC_LANG_PROGRAM([[
+- #if defined (HAVE_IDA_IDA_DENSE_H)
+- #include <ida/ida_dense.h>
+- #else
+- #include <ida_dense.h>
++ #if defined (HAVE_IDA_IDA_H)
++ #include <ida/ida.h>
++ #endif
++ #if defined (HAVE_SUNDIALS_SUNDIALS_MATRIX_H)
++ #include <sundials/sundials_matrix.h>
+ #endif
++ #if defined (HAVE_SUNDIALS_SUNDIALS_LINEARSOLVER_H)
++ #include <sundials/sundials_linearsolver.h>
++ #endif
++ #if defined (HAVE_IDA_IDA_DIRECT_H)
++ #include <ida/ida_direct.h>
++ #endif
+ ]], [[
+ void *mem = 0;
+ long int num = 0;
+ IDADense (mem, num);
+ ]])],
+- octave_cv_sundials_ida_dense=yes,
+- octave_cv_sundials_ida_dense=no)
++ octave_cv_sundials_sunlinsol_dense=yes,
++ octave_cv_sundials_sunlinsol_dense=no)
+ ])
+- if test $octave_cv_sundials_ida_dense = yes; then
+- AC_DEFINE(HAVE_SUNDIALS_IDADENSE, 1,
+- [Define to 1 if SUNDIALS IDA includes the IDADENSE linear solver.])
++ if test $octave_cv_sundials_sunlinsol_dense = yes; then
++ AC_DEFINE(HAVE_SUNDIALS_SUNLINSOL_DENSE, 1,
++ [Define to 1 if SUNDIALS IDA includes the SUNLINSOL_DENSE linear solver.])
+ else
+- warn_sundials_ida_dense="SUNDIALS IDA library does not include the IDADENSE linear solver, ode15i and ode15s will be disabled"
+- OCTAVE_CONFIGURE_WARNING([warn_sundials_ida_dense])
++ warn_sundials_ida_dense="SUNDIALS IDA library does not include the SUNLINSOL_DENSE linear solver, ode15i and ode15s will be disabled"
++ OCTAVE_CONFIGURE_WARNING([warn_sundials_sunlinsol_dense])
+ fi
+ ])
+ dnl
+diff --git a/scripts/ode/ode15i.m b/scripts/ode/ode15i.m
+--- a/scripts/ode/ode15i.m
++++ b/scripts/ode/ode15i.m
+@@ -452,7 +452,7 @@
+ %! assert ([t(end), y(end,:)], fref, 1e-3);
+
+ ## Jacobian fun sparse
+-%!testif HAVE_SUNDIALS_IDAKLU
++%!testif HAVE_SUNDIALS_SUNLINSOL_KLU
+ %! opt = odeset ("Jacobian", @jacfunsparse, "AbsTol", 1e-7, "RelTol", 1e-7);
+ %! [t, y] = ode15i (@rob, [0, 100], [1; 0; 0], [-1e-4; 1e-4; 0], opt);
+ %! assert ([t(end), y(end,:)], fref, 1e-3);
+@@ -545,7 +545,7 @@
+ %! "invalid value assigned to field 'Jacobian'");
+
+ ## Jacobian cell sparse wrong dimension
+-%!testif HAVE_SUNDIALS_IDAKLU
++%!testif HAVE_SUNDIALS_SUNLINSOL_KLU
+ %! DFDY = sparse ([-0.04, 1;
+ %! 0.04, 1]);
+ %! DFDYP = sparse ([-1, 0, 0;
+diff --git a/scripts/ode/ode15s.m b/scripts/ode/ode15s.m
+--- a/scripts/ode/ode15s.m
++++ b/scripts/ode/ode15s.m
+@@ -545,21 +545,21 @@
+ %! [t, y] = ode15s (@rob, [0, 100], [1; 0; 0], opt);
+ %! assert ([t(end), y(end,:)], frefrob, 1e-3);
+
+-%!testif HAVE_SUNDIALS_IDAKLU
++%!testif HAVE_SUNDIALS_SUNLINSOL_KLU
+ %! opt = odeset ("MStateDependence", "none",
+ %! "Mass", [1, 0, 0; 0, 1, 0; 0, 0, 0],
+ %! "Jacobian", @jacfunsparse);
+ %! [t, y] = ode15s (@rob, [0, 100], [1; 0; 0], opt);
+ %! assert ([t(end), y(end,:)], frefrob, 1e-3);
+
+-%!testif HAVE_SUNDIALS_IDAKLU
++%!testif HAVE_SUNDIALS_SUNLINSOL_KLU
+ %! opt = odeset ("MStateDependence", "none",
+ %! "Mass", sparse ([1, 0, 0; 0, 1, 0; 0, 0, 0]),
+ %! "Jacobian", @jacfunsparse);
+ %! [t, y] = ode15s (@rob, [0, 100], [1; 0; 0], opt);
+ %! assert ([t(end), y(end,:)], frefrob, 1e-3);
+
+-%!testif HAVE_SUNDIALS_IDAKLU
++%!testif HAVE_SUNDIALS_SUNLINSOL_KLU
+ %! warning ("off", "ode15s:mass_state_dependent_provided", "local");
+ %! opt = odeset ("MStateDependence", "none",
+ %! "Mass", @massdensefunstate,
+@@ -575,14 +575,14 @@
+ %! [t, y] = ode15s (@rob, [0, 100], [1; 0; 0], opt);
+ %! assert ([t(end), y(end,:)], frefrob, 1e-3);
+
+-%!testif HAVE_SUNDIALS_IDAKLU
++%!testif HAVE_SUNDIALS_SUNLINSOL_KLU
+ %! opt = odeset ("MStateDependence", "none",
+ %! "Mass", @massdensefuntime,
+ %! "Jacobian", @jacfunsparse);
+ %! [t, y] = ode15s (@rob, [0, 100], [1; 0; 0], opt);
+ %! assert ([t(end), y(end,:)], frefrob, 1e-3);
+
+-%!testif HAVE_SUNDIALS_IDAKLU
++%!testif HAVE_SUNDIALS_SUNLINSOL_KLU
+ %! opt = odeset ("MStateDependence", "none",
+ %! "Mass", @masssparsefuntime,
+ %! "Jacobian", @jacfunsparse);
+# HG changeset patch
+# Parent 6ef7a85c3b1908f57665a08d1d7205c15018c2af
+
+diff --git a/libinterp/dldfcn/__ode15__.cc b/libinterp/dldfcn/__ode15__.cc
+--- a/libinterp/dldfcn/__ode15__.cc
++++ b/libinterp/dldfcn/__ode15__.cc
+@@ -67,6 +67,18 @@
+
+
+ # if defined (HAVE_SUNLINSOL_SUNLINSOL_KLU_H)
++# if defined (HAVE_KLU_H)
++# include <klu.h>
++# endif
++# if defined (HAVE_KLU_KLU_H)
++# include <klu/klu.h>
++# endif
++# if defined (HAVE_SUITESPARSE_KLU_H)
++# include <suitesparse/klu.h>
++# endif
++# if defined (HAVE_UFPARSE_KLU_H)
++# include <ufsparse/klu.h>
++# endif
+ # include <sunlinsol/sunlinsol_klu.h>
+ # endif
+
+diff --git a/m4/acinclude.m4 b/m4/acinclude.m4
+--- a/m4/acinclude.m4
++++ b/m4/acinclude.m4
+@@ -2244,6 +2244,18 @@
+ #if defined (HAVE_SUNDIALS_SUNDIALS_SPARSE_H)
+ #include <sundials/sundials_sparse.h>
+ #endif
++ #if defined (HAVE_KLU_H)
++ #include <klu.h>
++ #endif
++ #if defined (HAVE_KLU_KLU_H)
++ #include <klu/klu.h>
++ #endif
++ #if defined (HAVE_SUITESPARSE_KLU_H)
++ #include <suitesparse/klu.h>
++ #endif
++ #if defined (HAVE_UFPARSE_KLU_H)
++ #include <ufsparse/klu.h>
++ #endif
+ #if defined (HAVE_SUNLINSOL_SUNLINSOL_KLU_H)
+ #include <sunlinsol/sunlinsol_klu.h>
+ #endif
More information about the arch-commits
mailing list