[arch-commits] Commit in sagemath-doc/repos/community-any (10 files)
Antonio Rojas
arojas at archlinux.org
Sat Apr 18 21:15:09 UTC 2020
Date: Saturday, April 18, 2020 @ 21:15:09
Author: arojas
Revision: 616170
archrelease: copy trunk to community-any
Added:
sagemath-doc/repos/community-any/PKGBUILD
(from rev 616169, sagemath-doc/trunk/PKGBUILD)
sagemath-doc/repos/community-any/docbuild_main.patch
(from rev 616169, sagemath-doc/trunk/docbuild_main.patch)
sagemath-doc/repos/community-any/sagemath-doc-sphinx-3.patch
(from rev 616169, sagemath-doc/trunk/sagemath-doc-sphinx-3.patch)
sagemath-doc/repos/community-any/sagemath-ecl-sigfpe.patch
(from rev 616169, sagemath-doc/trunk/sagemath-ecl-sigfpe.patch)
sagemath-doc/repos/community-any/sagemath-matplotlib-3.2.patch
(from rev 616169, sagemath-doc/trunk/sagemath-matplotlib-3.2.patch)
sagemath-doc/repos/community-any/sphinxify-warnings.patch
(from rev 616169, sagemath-doc/trunk/sphinxify-warnings.patch)
Deleted:
sagemath-doc/repos/community-any/PKGBUILD
sagemath-doc/repos/community-any/docbuild_main.patch
sagemath-doc/repos/community-any/sagemath-ecl-sigfpe.patch
sagemath-doc/repos/community-any/sphinxify-warnings.patch
-------------------------------+
PKGBUILD | 137 +++++++++---------
docbuild_main.patch | 12 -
sagemath-doc-sphinx-3.patch | 227 ++++++++++++++++++++++++++++++
sagemath-ecl-sigfpe.patch | 294 ++++++++++++++++++++--------------------
sagemath-matplotlib-3.2.patch | 62 ++++++++
sphinxify-warnings.patch | 32 ++--
6 files changed, 531 insertions(+), 233 deletions(-)
Deleted: PKGBUILD
===================================================================
--- PKGBUILD 2020-04-18 21:13:29 UTC (rev 616169)
+++ PKGBUILD 2020-04-18 21:15:09 UTC (rev 616170)
@@ -1,64 +0,0 @@
-# Maintainer: Antonio Rojas <arojas at archlinux.org>
-
-pkgname=sagemath-doc
-pkgver=9.0
-pkgrel=2
-pkgdesc="HTML documentation for SageMath"
-arch=(any)
-url="http://www.sagemath.org"
-license=(GPL)
-depends=(gap-doc python-pplpy)
-makedepends=(sagemath python-pyzmq python-docutils python-jupyter_client python-pkgconfig cython python-ipywidgets python-sphinx-1 thebe)
-source=(sagemath-$pkgver.tar.gz::"https://github.com/sagemath/sage/archive/$pkgver.tar.gz"
- docbuild_main.patch
- sagemath-ecl-sigfpe.patch
- sphinxify-warnings.patch)
-sha256sums=('6f5d42b306a2c03073dd95086f80602bd1a0b929b8ad19c6d219c8ca8e96da26'
- 'ea5e17bb7a7cb36a22e5e3872fcc2585852bc971c4b139b0b2cd69a36c1b009b'
- 'e44bbde87f3312548faad75b7383ef21fade55be251ab5804de41cd3842ca8a0'
- '99fc7f393d5ee2687573c0ef6bf5ecb75077e415aa0605af3766824fa11aafd6')
-
-prepare() {
- cd sage-$pkgver
-
-# fix relative imports
- patch -p0 -i ../docbuild_main.patch
-# use sage_setup imports from sagemath source, but use system sage ones (which include compiled modules)
- mkdir -p local-python
- ln -sr src/sage_setup local-python
-# Fix SIGFPE crashes with ecl 16.1.3 https://trac.sagemath.org/ticket/22191
- patch -p1 -i ../sagemath-ecl-sigfpe.patch
-# Fix sphinxify deprecation warnings
- patch -p1 -i ../sphinxify-warnings.patch
-}
-
-build() {
- cd sage-$pkgver/src
-
- export SAGE_LOCAL="/usr" \
- SAGE_ROOT="/usr" \
- SAGE_SRC="$PWD" \
- SAGE_DOC_SRC="$PWD"/doc \
- SAGE_DOC="$PWD"/doc \
- MATHJAX_DIR="/usr/share/mathjax2" \
- PYTHONPATH="$srcdir"/sage-$pkgver/local-python \
- SAGE_NUM_THREADS=10
- python sage_setup/docbuild --no-pdf-links --mathjax all html
-}
-
-package() {
- cd sage-$pkgver/src/doc
-
- mkdir -p "$pkgdir"/usr/share/doc/sage
- cp -r common "$pkgdir"/usr/share/doc/sage
- cp -r html "$pkgdir"/usr/share/doc/sage
-
-# Replace duplicated files by symlinks (Gentoo)
- cd "$pkgdir"/usr/share/doc/sage
- mv html/en/_static{,.tmp}
- for _dir in `find -name _static` ; do
- rm -r $_dir
- ln -s /usr/share/doc/sage/html/en/_static $_dir
- done
- mv html/en/_static{.tmp,}
-}
Copied: sagemath-doc/repos/community-any/PKGBUILD (from rev 616169, sagemath-doc/trunk/PKGBUILD)
===================================================================
--- PKGBUILD (rev 0)
+++ PKGBUILD 2020-04-18 21:15:09 UTC (rev 616170)
@@ -0,0 +1,73 @@
+# Maintainer: Antonio Rojas <arojas at archlinux.org>
+
+pkgname=sagemath-doc
+pkgver=9.0
+pkgrel=3
+pkgdesc="HTML documentation for SageMath"
+arch=(any)
+url="http://www.sagemath.org"
+license=(GPL)
+depends=(gap-doc python-pplpy)
+makedepends=(sagemath python-pyzmq python-docutils python-jupyter_client python-pkgconfig cython python-ipywidgets thebe)
+source=(sagemath-$pkgver.tar.gz::"https://github.com/sagemath/sage/archive/$pkgver.tar.gz"
+ docbuild_main.patch
+ sagemath-ecl-sigfpe.patch
+ sphinxify-warnings.patch
+ sagemath-matplotlib-3.2.patch
+ sagemath-doc-sphinx-3.patch)
+sha256sums=('6f5d42b306a2c03073dd95086f80602bd1a0b929b8ad19c6d219c8ca8e96da26'
+ 'ea5e17bb7a7cb36a22e5e3872fcc2585852bc971c4b139b0b2cd69a36c1b009b'
+ 'e44bbde87f3312548faad75b7383ef21fade55be251ab5804de41cd3842ca8a0'
+ '99fc7f393d5ee2687573c0ef6bf5ecb75077e415aa0605af3766824fa11aafd6'
+ '979777363001cca87f73128dd4db5f372fc9e4f1079805a20af01df47797468f'
+ '57dc8b1d2adb2bde9896edc2d123149897390af5c13d5fe02cc175850305200c')
+options=(!strip)
+
+prepare() {
+ cd sage-$pkgver
+
+# fix relative imports
+ patch -p0 -i ../docbuild_main.patch
+# use sage_setup imports from sagemath source, but use system sage ones (which include compiled modules)
+ mkdir -p local-python
+ ln -sr src/sage_setup local-python
+# Fix SIGFPE crashes with ecl 16.1.3 https://trac.sagemath.org/ticket/22191
+ patch -p1 -i ../sagemath-ecl-sigfpe.patch
+# Fix sphinxify deprecation warnings
+ patch -p1 -i ../sphinxify-warnings.patch
+# Fix warnings with matplotlib 3.2
+ patch -p1 -i ../sagemath-matplotlib-3.2.patch
+# Fix build with sphinx 3.0
+ patch -p1 -i ../sagemath-doc-sphinx-3.patch
+}
+
+build() {
+ cd sage-$pkgver/src
+
+ export SAGE_LOCAL="/usr" \
+ SAGE_ROOT="/usr" \
+ SAGE_SRC="$PWD" \
+ SAGE_DOC_SRC="$PWD"/doc \
+ SAGE_DOC="$PWD"/doc \
+ MATHJAX_DIR="/usr/share/mathjax2" \
+ PYTHONPATH="$srcdir"/sage-$pkgver/local-python \
+ SAGE_NUM_THREADS=10
+ python sage_setup/docbuild --no-pdf-links --mathjax all html -k
+}
+
+package() {
+ cd sage-$pkgver/src/doc
+
+ mkdir -p "$pkgdir"/usr/share/doc/sage
+ cp -r common "$pkgdir"/usr/share/doc/sage
+ cp -r html "$pkgdir"/usr/share/doc/sage
+
+# Replace duplicated files by symlinks (Gentoo)
+ cd "$pkgdir"/usr/share/doc/sage
+ mv html/en/_static{,.tmp}
+ for _dir in `find -name _static` ; do
+ rm -r $_dir
+ ln -s /usr/share/doc/sage/html/en/_static $_dir
+ done
+ mv html/en/_static{.tmp,}
+}
Deleted: docbuild_main.patch
===================================================================
--- docbuild_main.patch 2020-04-18 21:13:29 UTC (rev 616169)
+++ docbuild_main.patch 2020-04-18 21:15:09 UTC (rev 616170)
@@ -1,6 +0,0 @@
---- src/sage_setup/docbuild/__main__.py.orig
-+++ src/sage_setup/docbuild/__main__.py
-@@ -1,2 +1,2 @@
--from . import main
-+from sage_setup.docbuild import main
- main()
Copied: sagemath-doc/repos/community-any/docbuild_main.patch (from rev 616169, sagemath-doc/trunk/docbuild_main.patch)
===================================================================
--- docbuild_main.patch (rev 0)
+++ docbuild_main.patch 2020-04-18 21:15:09 UTC (rev 616170)
@@ -0,0 +1,6 @@
+--- src/sage_setup/docbuild/__main__.py.orig
++++ src/sage_setup/docbuild/__main__.py
+@@ -1,2 +1,2 @@
+-from . import main
++from sage_setup.docbuild import main
+ main()
Copied: sagemath-doc/repos/community-any/sagemath-doc-sphinx-3.patch (from rev 616169, sagemath-doc/trunk/sagemath-doc-sphinx-3.patch)
===================================================================
--- sagemath-doc-sphinx-3.patch (rev 0)
+++ sagemath-doc-sphinx-3.patch 2020-04-18 21:15:09 UTC (rev 616170)
@@ -0,0 +1,227 @@
+--- a/src/sage_setup/docbuild/__init__.py
++++ b/src/sage_setup/docbuild/__init__.py
+@@ -817,9 +817,13 @@ class ReferenceSubBuilder(DocBuilder):
+
+ env_pickle = os.path.join(self._doctrees_dir(), 'environment.pickle')
+ try:
+- env = BuildEnvironment.frompickle(env_pickle, FakeApp(self.dir))
+- logger.debug("Opened Sphinx environment: %s", env_pickle)
+- return env
++ with open(env_pickle, 'rb') as f:
++ import pickle
++ env = pickle.load(f)
++ env.app = FakeApp(self.dir)
++ env.config.values = env.app.config.values
++ logger.debug("Opened Sphinx environment: %s", env_pickle)
++ return env
+ except IOError as err:
+ logger.debug("Failed to open Sphinx environment: %s", err)
+
+--- a/src/sage/docs/conf.py
++++ b/src/sage/docs/conf.py
+@@ -8,6 +8,7 @@ from docutils import nodes
+ from docutils.transforms import Transform
+ from sphinx.ext.doctest import blankline_re
+ from sphinx import highlighting
++import sphinx.ext.intersphinx as intersphinx
+ from IPython.lib.lexers import IPythonConsoleLexer, IPyLexer
+
+ # If your extensions are in another directory, add it here.
+@@ -169,13 +169,8 @@ todo_include_todos = True
+
+ # Cross-links to other project's online documentation.
+ python_version = sys.version_info.major
+-intersphinx_mapping = {
+- 'python': ('https://docs.python.org/',
+- os.path.join(SAGE_DOC_SRC, "common",
+- "python{}.inv".format(python_version))),
+- 'pplpy': (PPLPY_DOCS, None)}
+
+-def set_intersphinx_mappings(app):
++def set_intersphinx_mappings(app, config):
+ """
+ Add precompiled inventory (the objects.inv)
+ """
+@@ -186,7 +182,11 @@ def set_intersphinx_mappings(app):
+ app.config.intersphinx_mapping = {}
+ return
+
+- app.config.intersphinx_mapping = intersphinx_mapping
++ app.config.intersphinx_mapping = {
++ 'python': ('https://docs.python.org/',
++ os.path.join(SAGE_DOC_SRC, "common",
++ "python{}.inv".format(python_version))),
++ 'pplpy': (PPLPY_DOCS, None)}
+
+ # Add master intersphinx mapping
+ dst = os.path.join(invpath, 'objects.inv')
+@@ -201,6 +201,7 @@ def set_intersphinx_mappings(app):
+ dst = os.path.join(invpath, directory, 'objects.inv')
+ app.config.intersphinx_mapping[src] = dst
+
++ intersphinx.normalize_intersphinx_mapping(app, config)
+
+ # By default document are not master.
+ multidocs_is_master = True
+@@ -669,7 +672,7 @@ def call_intersphinx(app, env, node, contnode):
+ """
+ debug_inf(app, "???? Trying intersphinx for %s" % node['reftarget'])
+ builder = app.builder
+- res = sphinx.ext.intersphinx.missing_reference(
++ res = intersphinx.missing_reference(
+ app, env, node, contnode)
+ if res:
+ # Replace absolute links to $SAGE_DOC by relative links: this
+@@ -852,11 +855,10 @@ def setup(app):
+ if app.srcdir.startswith(SAGE_DOC_SRC):
+ app.add_config_value('intersphinx_mapping', {}, False)
+ app.add_config_value('intersphinx_cache_limit', 5, False)
++ app.connect('config-inited', set_intersphinx_mappings)
++ app.connect('builder-inited', intersphinx.load_mappings)
+ # We do *not* fully initialize intersphinx since we call it by hand
+ # in find_sage_dangling_links.
+ # app.connect('missing-reference', missing_reference)
+ app.connect('missing-reference', find_sage_dangling_links)
+- import sphinx.ext.intersphinx
+- app.connect('builder-inited', set_intersphinx_mappings)
+- app.connect('builder-inited', sphinx.ext.intersphinx.load_mappings)
+ app.connect('builder-inited', nitpick_patch_config)
+--- a/src/sage_setup/docbuild/ext/multidocs.py
++++ b/src/sage_setup/docbuild/ext/multidocs.py
+@@ -47,32 +47,39 @@ def merge_environment(app, env):
+ - domaindata['py']['modules'] # list of python modules
+ """
+ logger.info(bold('Merging environment/index files...'))
++ if not hasattr(env, "todo_all_todos"):
++ env.todo_all_todos = []
++ if not env.domaindata['citation'].get('citations'):
++ env.domaindata['citation']['citations'] = dict()
+ for curdoc in app.env.config.multidocs_subdoc_list:
+ logger.info(" %s:"%curdoc, nonl=1)
+ docenv = get_env(app, curdoc)
+ if docenv is not None:
+ fixpath = lambda path: os.path.join(curdoc, path)
++ todos = docenv.todo_all_todos if hasattr(docenv, "todo_all_todos") else []
++ citations = docenv.domaindata['citation'].get('citations', dict())
++ indexentries = docenv.domaindata['index'].get('entries', dict())
+ logger.info(" %s todos, %s index, %s citations"%(
+- len(docenv.todo_all_todos),
+- len(docenv.indexentries),
+- len(docenv.domaindata["std"]["citations"])
++ len(todos),
++ len(indexentries),
++ len(citations)
+ ), nonl=1)
+
+ # merge titles
+ for t in docenv.titles:
+ env.titles[fixpath(t)] = docenv.titles[t]
+ # merge the todo links
+- for dct in docenv.todo_all_todos:
++ for dct in todos:
+ dct['docname'] = fixpath(dct['docname'])
+- env.todo_all_todos += docenv.todo_all_todos
++ env.todo_all_todos += todos
+ # merge the html index links
+ newindex = {}
+- for ind in docenv.indexentries:
++ for ind in indexentries:
+ if ind.startswith('sage/'):
+- newindex[fixpath(ind)] = docenv.indexentries[ind]
++ newindex[fixpath(ind)] = indexentries[ind]
+ else:
+- newindex[ind] = docenv.indexentries[ind]
+- env.indexentries.update(newindex)
++ newindex[ind] = indexentries[ind]
++ env.domaindata['index']['entries'].update(newindex)
+ # merge the all_docs links, needed by the js index
+ newalldoc = {}
+ for ind in docenv.all_docs:
+@@ -86,24 +93,23 @@ def merge_environment(app, env):
+ env.metadata[ind] = md
+ # merge the citations
+ newcite = {}
+- citations = docenv.domaindata["std"]["citations"]
+- for ind, (path, tag, lineno) in six.iteritems(docenv.domaindata["std"]["citations"]):
++ for ind, (path, tag, lineno) in six.iteritems(citations):
+ # TODO: Warn on conflicts
+ newcite[ind] = (fixpath(path), tag, lineno)
+- env.domaindata["std"]["citations"].update(newcite)
++ env.domaindata['citation']['citations'].update(newcite)
+ # merge the py:module indexes
+ newmodules = {}
+- for ind,(modpath,v1,v2,v3) in (
++ for ind,(modpath,v1,v2,v3,v4) in (
+ six.iteritems(docenv.domaindata['py']['modules'])):
+- newmodules[ind] = (fixpath(modpath),v1,v2,v3)
++ newmodules[ind] = (fixpath(modpath),v1,v2,v3,v4)
+ env.domaindata['py']['modules'].update(newmodules)
+ logger.info(", %s modules"%(len(newmodules)))
+ logger.info('... done (%s todos, %s index, %s citations, %s modules)'%(
+ len(env.todo_all_todos),
+- len(env.indexentries),
+- len(env.domaindata["std"]["citations"]),
++ len(env.domaindata['index']['entries']),
++ len(env.domaindata['citation']['citations']),
+ len(env.domaindata['py']['modules'])))
+- write_citations(app, env.domaindata["std"]["citations"])
++ write_citations(app, env.domaindata['citation']['citations'])
+
+
+ def get_env(app, curdoc):
+@@ -253,7 +259,7 @@ def fetch_citation(app, env):
+ with open(filename, 'rb') as f:
+ cache = cPickle.load(f)
+ logger.info("done (%s citations)."%len(cache))
+- cite = env.domaindata["std"]["citations"]
++ cite = env.domaindata['citation']['citations']
+ for ind, (path, tag, lineno) in six.iteritems(cache):
+ if ind not in cite: # don't override local citation
+ cite[ind] = (os.path.join("..", path), tag, lineno)
+--- a/src/sage_setup/docbuild/ext/sage_autodoc.py
++++ b/src/sage_setup/docbuild/ext/sage_autodoc.py
+@@ -35,14 +35,15 @@ import sys
+ from docutils.statemachine import ViewList
+
+ import sphinx
+-from sphinx.ext.autodoc.importer import mock, import_object, get_object_members
++from sphinx.ext.autodoc import mock
++from sphinx.ext.autodoc.importer import import_object, get_object_members, get_module_members
+ from sphinx.locale import _, __
+ from sphinx.pycode import ModuleAnalyzer
+ from sphinx.errors import PycodeError
+ from sphinx.util import logging
+ from sphinx.util import rpartition, force_decode
+ from sphinx.util.docstrings import prepare_docstring
+-from sphinx.util.inspect import isdescriptor, safe_getmembers, \
++from sphinx.util.inspect import isdescriptor, \
+ safe_getattr, object_description, is_builtin_class_method, \
+ isenumattribute, isclassmethod, isstaticmethod, getdoc
+
+@@ -536,7 +537,7 @@ class Documenter(object):
+
+ # add content from docstrings
+ if not no_docstring:
+- encoding = self.analyzer and self.analyzer.encoding
++ encoding = self.analyzer and self.analyzer._encoding
+ docstrings = self.get_doc(encoding)
+ if not docstrings:
+ # append at least a dummy docstring, so that the event
+@@ -882,7 +883,7 @@ class ModuleDocumenter(Documenter):
+ if not hasattr(self.object, '__all__'):
+ # for implicit module members, check __module__ to avoid
+ # documenting imported objects
+- return True, safe_getmembers(self.object)
++ return True, get_module_members(self.object)
+ else:
+ memberlist = self.object.__all__
+ # Sometimes __all__ is broken...
+@@ -893,7 +894,7 @@ class ModuleDocumenter(Documenter):
+ '(in module %s) -- ignoring __all__' %
+ (memberlist, self.fullname))
+ # fall back to all members
+- return True, safe_getmembers(self.object)
++ return True, get_module_members(self.object)
+ else:
+ memberlist = self.options.members or []
+ ret = []
Deleted: sagemath-ecl-sigfpe.patch
===================================================================
--- sagemath-ecl-sigfpe.patch 2020-04-18 21:13:29 UTC (rev 616169)
+++ sagemath-ecl-sigfpe.patch 2020-04-18 21:15:09 UTC (rev 616170)
@@ -1,147 +0,0 @@
-diff --git a/src/sage/libs/ecl.pyx b/src/sage/libs/ecl.pyx
-index e408866..fa24ac0 100644
---- a/src/sage/libs/ecl.pyx
-+++ b/src/sage/libs/ecl.pyx
-@@ -15,7 +15,7 @@ from __future__ import print_function, absolute_import
- #adapted to work with pure Python types.
-
- from libc.stdlib cimport abort
--from libc.signal cimport SIGINT, SIGBUS, SIGSEGV, SIGCHLD
-+from libc.signal cimport SIGINT, SIGBUS, SIGSEGV, SIGCHLD, SIGFPE
- from libc.signal cimport raise_ as signal_raise
- from posix.signal cimport sigaction, sigaction_t
- cimport cysignals.signals
-@@ -47,9 +47,14 @@ cdef extern from "eclsig.h":
- void ecl_sig_off()
- cdef sigaction_t ecl_sigint_handler
- cdef sigaction_t ecl_sigbus_handler
-+ cdef sigaction_t ecl_sigfpe_handler
- cdef sigaction_t ecl_sigsegv_handler
- cdef mpz_t ecl_mpz_from_bignum(cl_object obj)
- cdef cl_object ecl_bignum_from_mpz(mpz_t num)
-+ cdef int fegetexcept()
-+ cdef int feenableexcept(int)
-+ cdef int fedisableexcept(int)
-+ cdef int ecl_feflags
-
- cdef cl_object string_to_object(char * s):
- return ecl_read_from_cstring(s)
-@@ -238,6 +243,7 @@ def init_ecl():
- global ecl_has_booted
- cdef char *argv[1]
- cdef sigaction_t sage_action[32]
-+ cdef int sage_fpes
- cdef int i
-
- if ecl_has_booted:
-@@ -257,6 +263,8 @@ def init_ecl():
- for i in range(1,32):
- sigaction(i, NULL, &sage_action[i])
-
-+ sage_fpes = fegetexcept()
-+
- #initialize ECL
- ecl_set_option(ECL_OPT_SIGNAL_HANDLING_THREAD, 0)
- cl_boot(1, argv)
-@@ -264,8 +272,12 @@ def init_ecl():
- #save signal handler from ECL
- sigaction(SIGINT, NULL, &ecl_sigint_handler)
- sigaction(SIGBUS, NULL, &ecl_sigbus_handler)
-+ sigaction(SIGFPE, NULL, &ecl_sigfpe_handler)
- sigaction(SIGSEGV, NULL, &ecl_sigsegv_handler)
-
-+ #save ECL's floating point exception flags
-+ ecl_feflags = fegetexcept()
-+
- #verify that no SIGCHLD handler was installed
- cdef sigaction_t sig_test
- sigaction(SIGCHLD, NULL, &sig_test)
-@@ -276,6 +288,9 @@ def init_ecl():
- for i in range(1,32):
- sigaction(i, &sage_action[i], NULL)
-
-+ fedisableexcept(ecl_feflags)
-+ feenableexcept(sage_fpes)
-+
- #initialise list of objects and bind to global variable
- # *SAGE-LIST-OF-OBJECTS* to make it rooted in the reachable tree for the GC
- list_of_objects=cl_cons(Cnil,cl_cons(Cnil,Cnil))
-@@ -319,7 +334,6 @@ def init_ecl():
- (values nil (princ-to-string cnd)))))
- """))
- safe_funcall_clobj=cl_eval(string_to_object(b"(symbol-function 'sage-safe-funcall)"))
--
- ecl_has_booted = 1
-
- cdef cl_object ecl_safe_eval(cl_object form) except NULL:
-diff --git a/src/sage/libs/eclsig.h b/src/sage/libs/eclsig.h
-index f9f2690..a7e1f40 100644
---- a/src/sage/libs/eclsig.h
-+++ b/src/sage/libs/eclsig.h
-@@ -9,24 +9,66 @@
-
-
- #include <signal.h>
-+
-+/* Rummage around to determine how ECL was configured */
-+#define ECL_AVOID_FPE_H /* Prevent some local includes */
-+#include <ecl/config-internal.h>
-+
-+#ifdef HAVE_FENV_H
-+#include <fenv.h>
-+#ifndef FE_ALL_EXCEPT
-+#define FE_ALL_EXCEPT FE_DIVBYZERO | FE_OVERFLOW | FE_UNDERFLOW | FE_INVALID
-+#endif
-+#else
-+#ifndef FE_ALL_EXCEPT
-+#define FE_ALL_EXCEPT 0
-+#endif
-+#define feclearexcept(flags) do {} while (0)
-+#endif
-+
-+#ifndef HAVE_FEENABLEEXCEPT
-+/* These are GNU extensions */
-+#define fegetexcept() 0
-+#define feenablexcept(flags) do {} while (0)
-+#define fdisableexcept(flags) do {} while (0)
-+#endif
-+
- static struct sigaction ecl_sigint_handler;
- static struct sigaction ecl_sigbus_handler;
-+static struct sigaction ecl_sigfpe_handler;
- static struct sigaction ecl_sigsegv_handler;
- static struct sigaction sage_sigint_handler;
- static struct sigaction sage_sigbus_handler;
-+static struct sigaction sage_sigfpe_handler;
- static struct sigaction sage_sigsegv_handler;
-+static int ecl_feflags;
-+static int sage_feflags;
-
- static inline void set_ecl_signal_handler(void)
- {
- sigaction(SIGINT, &ecl_sigint_handler, &sage_sigint_handler);
- sigaction(SIGBUS, &ecl_sigbus_handler, &sage_sigbus_handler);
-+ sigaction(SIGFPE, &ecl_sigfpe_handler, &sage_sigfpe_handler);
- sigaction(SIGSEGV, &ecl_sigsegv_handler, &sage_sigsegv_handler);
-+
-+ /* first clear pending floating point exceptions, if any */
-+ feclearexcept(FE_ALL_EXCEPT);
-+
-+ /* sage_feflags should be 0; we don't set them otherwise */
-+ sage_feflags = fedisableexcept(FE_ALL_EXCEPT);
-+ feenableexcept(ecl_feflags);
- }
-
- static inline void unset_ecl_signal_handler(void)
- {
-+ /* clear pending exceptions and restore previous exception mask */
-+ feclearexcept(FE_ALL_EXCEPT);
-+ ecl_feflags = fedisableexcept(FE_ALL_EXCEPT);
-+ feenableexcept(sage_feflags);
-+
- sigaction(SIGINT, &sage_sigint_handler, NULL);
- sigaction(SIGBUS, &sage_sigbus_handler, NULL);
-+ sigaction(SIGFPE, &sage_sigfpe_handler, NULL);
- sigaction(SIGSEGV, &sage_sigsegv_handler, NULL);
- }
-
Copied: sagemath-doc/repos/community-any/sagemath-ecl-sigfpe.patch (from rev 616169, sagemath-doc/trunk/sagemath-ecl-sigfpe.patch)
===================================================================
--- sagemath-ecl-sigfpe.patch (rev 0)
+++ sagemath-ecl-sigfpe.patch 2020-04-18 21:15:09 UTC (rev 616170)
@@ -0,0 +1,147 @@
+diff --git a/src/sage/libs/ecl.pyx b/src/sage/libs/ecl.pyx
+index e408866..fa24ac0 100644
+--- a/src/sage/libs/ecl.pyx
++++ b/src/sage/libs/ecl.pyx
+@@ -15,7 +15,7 @@ from __future__ import print_function, absolute_import
+ #adapted to work with pure Python types.
+
+ from libc.stdlib cimport abort
+-from libc.signal cimport SIGINT, SIGBUS, SIGSEGV, SIGCHLD
++from libc.signal cimport SIGINT, SIGBUS, SIGSEGV, SIGCHLD, SIGFPE
+ from libc.signal cimport raise_ as signal_raise
+ from posix.signal cimport sigaction, sigaction_t
+ cimport cysignals.signals
+@@ -47,9 +47,14 @@ cdef extern from "eclsig.h":
+ void ecl_sig_off()
+ cdef sigaction_t ecl_sigint_handler
+ cdef sigaction_t ecl_sigbus_handler
++ cdef sigaction_t ecl_sigfpe_handler
+ cdef sigaction_t ecl_sigsegv_handler
+ cdef mpz_t ecl_mpz_from_bignum(cl_object obj)
+ cdef cl_object ecl_bignum_from_mpz(mpz_t num)
++ cdef int fegetexcept()
++ cdef int feenableexcept(int)
++ cdef int fedisableexcept(int)
++ cdef int ecl_feflags
+
+ cdef cl_object string_to_object(char * s):
+ return ecl_read_from_cstring(s)
+@@ -238,6 +243,7 @@ def init_ecl():
+ global ecl_has_booted
+ cdef char *argv[1]
+ cdef sigaction_t sage_action[32]
++ cdef int sage_fpes
+ cdef int i
+
+ if ecl_has_booted:
+@@ -257,6 +263,8 @@ def init_ecl():
+ for i in range(1,32):
+ sigaction(i, NULL, &sage_action[i])
+
++ sage_fpes = fegetexcept()
++
+ #initialize ECL
+ ecl_set_option(ECL_OPT_SIGNAL_HANDLING_THREAD, 0)
+ cl_boot(1, argv)
+@@ -264,8 +272,12 @@ def init_ecl():
+ #save signal handler from ECL
+ sigaction(SIGINT, NULL, &ecl_sigint_handler)
+ sigaction(SIGBUS, NULL, &ecl_sigbus_handler)
++ sigaction(SIGFPE, NULL, &ecl_sigfpe_handler)
+ sigaction(SIGSEGV, NULL, &ecl_sigsegv_handler)
+
++ #save ECL's floating point exception flags
++ ecl_feflags = fegetexcept()
++
+ #verify that no SIGCHLD handler was installed
+ cdef sigaction_t sig_test
+ sigaction(SIGCHLD, NULL, &sig_test)
+@@ -276,6 +288,9 @@ def init_ecl():
+ for i in range(1,32):
+ sigaction(i, &sage_action[i], NULL)
+
++ fedisableexcept(ecl_feflags)
++ feenableexcept(sage_fpes)
++
+ #initialise list of objects and bind to global variable
+ # *SAGE-LIST-OF-OBJECTS* to make it rooted in the reachable tree for the GC
+ list_of_objects=cl_cons(Cnil,cl_cons(Cnil,Cnil))
+@@ -319,7 +334,6 @@ def init_ecl():
+ (values nil (princ-to-string cnd)))))
+ """))
+ safe_funcall_clobj=cl_eval(string_to_object(b"(symbol-function 'sage-safe-funcall)"))
+-
+ ecl_has_booted = 1
+
+ cdef cl_object ecl_safe_eval(cl_object form) except NULL:
+diff --git a/src/sage/libs/eclsig.h b/src/sage/libs/eclsig.h
+index f9f2690..a7e1f40 100644
+--- a/src/sage/libs/eclsig.h
++++ b/src/sage/libs/eclsig.h
+@@ -9,24 +9,66 @@
+
+
+ #include <signal.h>
++
++/* Rummage around to determine how ECL was configured */
++#define ECL_AVOID_FPE_H /* Prevent some local includes */
++#include <ecl/config-internal.h>
++
++#ifdef HAVE_FENV_H
++#include <fenv.h>
++#ifndef FE_ALL_EXCEPT
++#define FE_ALL_EXCEPT FE_DIVBYZERO | FE_OVERFLOW | FE_UNDERFLOW | FE_INVALID
++#endif
++#else
++#ifndef FE_ALL_EXCEPT
++#define FE_ALL_EXCEPT 0
++#endif
++#define feclearexcept(flags) do {} while (0)
++#endif
++
++#ifndef HAVE_FEENABLEEXCEPT
++/* These are GNU extensions */
++#define fegetexcept() 0
++#define feenablexcept(flags) do {} while (0)
++#define fdisableexcept(flags) do {} while (0)
++#endif
++
+ static struct sigaction ecl_sigint_handler;
+ static struct sigaction ecl_sigbus_handler;
++static struct sigaction ecl_sigfpe_handler;
+ static struct sigaction ecl_sigsegv_handler;
+ static struct sigaction sage_sigint_handler;
+ static struct sigaction sage_sigbus_handler;
++static struct sigaction sage_sigfpe_handler;
+ static struct sigaction sage_sigsegv_handler;
++static int ecl_feflags;
++static int sage_feflags;
+
+ static inline void set_ecl_signal_handler(void)
+ {
+ sigaction(SIGINT, &ecl_sigint_handler, &sage_sigint_handler);
+ sigaction(SIGBUS, &ecl_sigbus_handler, &sage_sigbus_handler);
++ sigaction(SIGFPE, &ecl_sigfpe_handler, &sage_sigfpe_handler);
+ sigaction(SIGSEGV, &ecl_sigsegv_handler, &sage_sigsegv_handler);
++
++ /* first clear pending floating point exceptions, if any */
++ feclearexcept(FE_ALL_EXCEPT);
++
++ /* sage_feflags should be 0; we don't set them otherwise */
++ sage_feflags = fedisableexcept(FE_ALL_EXCEPT);
++ feenableexcept(ecl_feflags);
+ }
+
+ static inline void unset_ecl_signal_handler(void)
+ {
++ /* clear pending exceptions and restore previous exception mask */
++ feclearexcept(FE_ALL_EXCEPT);
++ ecl_feflags = fedisableexcept(FE_ALL_EXCEPT);
++ feenableexcept(sage_feflags);
++
+ sigaction(SIGINT, &sage_sigint_handler, NULL);
+ sigaction(SIGBUS, &sage_sigbus_handler, NULL);
++ sigaction(SIGFPE, &sage_sigfpe_handler, NULL);
+ sigaction(SIGSEGV, &sage_sigsegv_handler, NULL);
+ }
+
Copied: sagemath-doc/repos/community-any/sagemath-matplotlib-3.2.patch (from rev 616169, sagemath-doc/trunk/sagemath-matplotlib-3.2.patch)
===================================================================
--- sagemath-matplotlib-3.2.patch (rev 0)
+++ sagemath-matplotlib-3.2.patch 2020-04-18 21:15:09 UTC (rev 616170)
@@ -0,0 +1,62 @@
+diff --git a/src/sage/plot/contour_plot.py b/src/sage/plot/contour_plot.py
+index a7533fa3d9..12a2b1f670 100644
+--- a/src/sage/plot/contour_plot.py
++++ b/src/sage/plot/contour_plot.py
+@@ -223,7 +223,7 @@ class ContourPlot(GraphicPrimitive):
+ cb.add_lines(CS)
+
+
+- at suboptions('colorbar', orientation='vertical', format=None, spacing=None)
++ at suboptions('colorbar', orientation='vertical', format=None, spacing='uniform')
+ @suboptions('label', fontsize=9, colors='blue', inline=None, inline_spacing=3,
+ fmt="%1.2f")
+ @options(plot_points=100, fill=True, contours=None, linewidths=None,
+diff --git a/src/sage/plot/colors.py b/src/sage/plot/colors.py
+index 1860b6c948..af6fc7ec64 100644
+--- a/src/sage/plot/colors.py
++++ b/src/sage/plot/colors.py
+@@ -20,7 +20,7 @@ comprises the "official" W3C CSS3_ / SVG_ colors.
+ For a list of color maps in Sage, evaluate::
+
+ sage: sorted(colormaps)
+- [u'Accent', u'Accent_r', u'Blues', u'Blues_r', u'BrBG', u'BrBG_r', ...]
++ [u'Accent', u'Blues', u'BrBG', ...]
+
+ These are imported from matplotlib's cm_ module.
+
+@@ -1374,7 +1374,7 @@ def get_cmap(cmap):
+ and color names. For a list of map names, evaluate::
+
+ sage: sorted(colormaps)
+- [u'Accent', u'Accent_r', u'Blues', u'Blues_r', ...]
++ [u'Accent', u'Blues', ...]
+
+ See :func:`rgbcolor` for valid list/tuple element formats.
+
+@@ -1468,7 +1468,7 @@ class Colormaps(collections.MutableMapping):
+ For a list of map names, evaluate::
+
+ sage: sorted(colormaps)
+- [u'Accent', u'Accent_r', u'Blues', u'Blues_r', ...]
++ [u'Accent', u'Blues', ...]
+ """
+ def __init__(self):
+ """
+@@ -1495,7 +1495,7 @@ class Colormaps(collections.MutableMapping):
+ sage: len(maps.maps)
+ 0
+ sage: maps.load_maps()
+- sage: len(maps.maps)>130
++ sage: len(maps.maps)>65
+ True
+ """
+ global cm
+@@ -1539,7 +1539,7 @@ class Colormaps(collections.MutableMapping):
+
+ sage: from sage.plot.colors import Colormaps
+ sage: maps = Colormaps()
+- sage: len(maps)>130
++ sage: len(maps)>65
+ True
+ """
+ self.load_maps()
Deleted: sphinxify-warnings.patch
===================================================================
--- sphinxify-warnings.patch 2020-04-18 21:13:29 UTC (rev 616169)
+++ sphinxify-warnings.patch 2020-04-18 21:15:09 UTC (rev 616170)
@@ -1,16 +0,0 @@
-diff --git a/src/doc/common/themes/sage/search.html b/src/doc/common/themes/sage/search.html
-index 88d5813bea..9fd5017991 100644
---- a/src/doc/common/themes/sage/search.html
-+++ b/src/doc/common/themes/sage/search.html
-@@ -9,7 +9,10 @@
- #}
- {% extends "layout.html" %}
- {% set title = _('Search') %}
--{% set script_files = script_files + ['_static/searchtools.js'] %}
-+{%- block scripts %}
-+ {{ super() }}
-+ <script type="text/javascript" src="{{ pathto('_static/searchtools.js', 1) }}"></script>
-+{%- endblock %}
- {% block extrahead %}
- <script type="text/javascript">
- jQuery(function() { Search.loadIndex("{{ pathto('searchindex.js', 1) }}"); });
Copied: sagemath-doc/repos/community-any/sphinxify-warnings.patch (from rev 616169, sagemath-doc/trunk/sphinxify-warnings.patch)
===================================================================
--- sphinxify-warnings.patch (rev 0)
+++ sphinxify-warnings.patch 2020-04-18 21:15:09 UTC (rev 616170)
@@ -0,0 +1,16 @@
+diff --git a/src/doc/common/themes/sage/search.html b/src/doc/common/themes/sage/search.html
+index 88d5813bea..9fd5017991 100644
+--- a/src/doc/common/themes/sage/search.html
++++ b/src/doc/common/themes/sage/search.html
+@@ -9,7 +9,10 @@
+ #}
+ {% extends "layout.html" %}
+ {% set title = _('Search') %}
+-{% set script_files = script_files + ['_static/searchtools.js'] %}
++{%- block scripts %}
++ {{ super() }}
++ <script type="text/javascript" src="{{ pathto('_static/searchtools.js', 1) }}"></script>
++{%- endblock %}
+ {% block extrahead %}
+ <script type="text/javascript">
+ jQuery(function() { Search.loadIndex("{{ pathto('searchindex.js', 1) }}"); });
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