[arch-commits] Commit in sagemath/repos (7 files)
Antonio Rojas
arojas at gemini.archlinux.org
Mon Aug 30 19:33:52 UTC 2021
Date: Monday, August 30, 2021 @ 19:33:51
Author: arojas
Revision: 1010066
archrelease: copy trunk to community-testing-x86_64
Added:
sagemath/repos/community-testing-x86_64/
sagemath/repos/community-testing-x86_64/PKGBUILD
(from rev 1010065, sagemath/trunk/PKGBUILD)
sagemath/repos/community-testing-x86_64/latte-count.patch
(from rev 1010065, sagemath/trunk/latte-count.patch)
sagemath/repos/community-testing-x86_64/sagemath-lcalc2.patch
(from rev 1010065, sagemath/trunk/sagemath-lcalc2.patch)
sagemath/repos/community-testing-x86_64/sagemath-lrcalc2.patch
(from rev 1010065, sagemath/trunk/sagemath-lrcalc2.patch)
sagemath/repos/community-testing-x86_64/sagemath-optional-packages.patch
(from rev 1010065, sagemath/trunk/sagemath-optional-packages.patch)
sagemath/repos/community-testing-x86_64/test-optional.patch
(from rev 1010065, sagemath/trunk/test-optional.patch)
----------------------------------+
PKGBUILD | 98 ++++++
latte-count.patch | 89 +++++
sagemath-lcalc2.patch | 507 ++++++++++++++++++++++++++++++++
sagemath-lrcalc2.patch | 573 +++++++++++++++++++++++++++++++++++++
sagemath-optional-packages.patch | 17 +
test-optional.patch | 25 +
6 files changed, 1309 insertions(+)
Copied: sagemath/repos/community-testing-x86_64/PKGBUILD (from rev 1010065, sagemath/trunk/PKGBUILD)
===================================================================
--- community-testing-x86_64/PKGBUILD (rev 0)
+++ community-testing-x86_64/PKGBUILD 2021-08-30 19:33:51 UTC (rev 1010066)
@@ -0,0 +1,98 @@
+# Maintainer: Antonio Rojas <arojas at archlinux.org>
+# Contributor: Evgeniy Alekseev <arcanis.arch at gmail dot com>
+# Contributor: Daniel Wallace <danielwallace at gtmanfred dot com>
+# Contributor: Thomas Dziedzic <gostrc at gmail dot com>
+# Contributor: Osman Ugus <ugus11 at yahoo dot com>
+# Contributor: Stefan Husmann <stefan-husmann at t-online dot de>
+
+pkgname=sagemath
+pkgver=9.4
+pkgrel=1
+pkgdesc='Open Source Mathematics Software, free alternative to Magma, Maple, Mathematica, and Matlab'
+arch=(x86_64)
+url='http://www.sagemath.org'
+license=(GPL)
+depends=(palp brial cliquer maxima-ecl gfan sympow nauty python-rpy2 python-fpylll python-psutil python-cypari2
+ python-matplotlib python-scipy python-sympy python-networkx python-pplpy python-sphinx python-ipywidgets python-memory-allocator
+ gap flintqs lcalc lrcalc arb eclib zn_poly gd python-cvxopt pynac linbox m4rie pari-galdata pari-seadata-small planarity rankwidth tachyon
+ sage-data-combinatorial_designs sage-data-elliptic_curves sage-data-graphs sage-data-polytopes_db sage-data-conway_polynomials
+ iml giac libhomfly libbraiding symmetrica threejs-sage)
+optdepends=('cython: to compile cython code' 'python-pkgconfig: to compile cython code'
+ 'jmol: alternative 3D plot engine' 'jupyter-jsmol: alternative 3D plot engine in the Jupyter notebook'
+ 'sagemath-doc: HTML documentation' 'python-igraph: igraph backend for graph theory'
+ 'sage-numerical-backends-coin: COIN mixed integer linear programming backend'
+ 'coin-or-csdp: for computing Lovász theta-function of graphs'
+ 'buckygen: for generating fullerene graphs' 'plantri: for generating some classes of graphs' 'benzene: for generating fusenes and benzenoids'
+ 'ffmpeg: to export animations to video' 'imagemagick: to show animations'
+ 'coxeter: Coxeter groups implementation'
+ 'rubiks: Rubiks cube algorithms'
+ 'lrs: Algorithms for linear reverse search used in game theory and for computing volume of polytopes'
+ 'python-pynormaliz: Normaliz backend for polyhedral computations'
+ 'latte-integrale: integral point count in polyhedra' 'python-jupymake: polymake backend for polyhedral computations'
+ 'shared_meataxe: faster matrix arithmetic over finite fields' 'openblas: faster linear algebra'
+ 'sirocco: for computing the fundamental group of the complement of a plane curve' 'primecount: faster prime_pi implementation'
+ 'dot2tex: for displaying some diagrams' 'cryptominisat5: SAT solver' 'python-pycosat: picosat SAT solver'
+ 'python-pip: to install optional packages with sage -pip' 'sage-notebook-exporter: convert flask notebooks to Jupyter')
+makedepends=(cython boost ratpoints python-jinja sirocco mcqd coxeter bliss tdlib python-pkgconfig shared_meataxe primecount)
+conflicts=(sagemath-jupyter)
+replaces=(sagemath-jupyter)
+source=(https://github.com/sagemath/sage/archive/$pkgver/$pkgname-$pkgver.tar.gz
+ sagemath-optional-packages.patch
+ latte-count.patch
+ test-optional.patch
+ sagemath-lrcalc2.patch
+ sagemath-lcalc2.patch)
+sha256sums=('47190f37e679c2483dadc13112595bacb399dfe4c4a0cde18d3627f5b2db0ea5'
+ '665fc76fa57b1c50f122a8d1874e187afc97a9120921706176b63da3d9d30651'
+ '88e944f23c3b2391dc2e9f9be8e1131152d837dc8c829dfc714663869a272e81'
+ 'af984186f852d2847d770a18fb6822296c50a652dbf55a1ed59d27517c3d3ee4'
+ '240ac4c29d96d56407a20e1b7f9846e342a7eb2bb4edd6e5c86b3b5a8ff462f9'
+ '791b3f2c6e5529b09c3abf2f9703b6cf754d633a7a4177645b70b72ea014135a')
+
+prepare(){
+ cd sage-$pkgver
+
+# Upstream patches
+# Replace lrcalc.pyx with a wrapper over lrcalc's python bindings https://trac.sagemath.org/ticket/31355
+ patch -p1 -i ../sagemath-lrcalc2.patch
+# Port to lcalc 2 https://trac.sagemath.org/ticket/32037
+ patch -p1 -i ../sagemath-lcalc2.patch
+
+# Arch-specific patches
+# assume all optional packages are installed
+ patch -p1 -i ../sagemath-optional-packages.patch
+# don't list optional packages when running tests
+ patch -p1 -i ../test-optional.patch
+# use correct latte-count binary name
+ patch -p1 -i ../latte-count.patch
+
+ cd build/pkgs/sagelib
+ ./bootstrap
+}
+
+build() {
+ cd sage-$pkgver/pkgs/sagemath-standard
+
+ export SAGE_NUM_THREADS=10
+ python setup.py build
+}
+
+package() {
+ cd sage-$pkgver/pkgs/sagemath-standard
+
+ python setup.py install --root="$pkgdir" --optimize=1
+
+# Remove sage_setup
+ rm -r "$pkgdir"/usr/lib/python*/site-packages/sage_setup
+
+# fix symlinks to assets
+ _pythonpath=`python -c "from sysconfig import get_path; print(get_path('platlib'))"`
+ for _i in $(ls "$srcdir"/sage-$pkgver/src/sage/ext_data/notebook-ipython); do
+ rm "$pkgdir"/usr/share/jupyter/kernels/sagemath/$_i
+ ln -s $_pythonpath/sage/ext_data/notebook-ipython/$_i "$pkgdir"/usr/share/jupyter/kernels/sagemath/
+ done
+
+# adjust threejs version
+ rm "$pkgdir"$_pythonpath/sage/ext_data/threejs/threejs-version.txt
+ ln -s /usr/share/threejs-sage/version "$pkgdir"$_pythonpath/sage/ext_data/threejs/threejs-version.txt
+}
Copied: sagemath/repos/community-testing-x86_64/latte-count.patch (from rev 1010065, sagemath/trunk/latte-count.patch)
===================================================================
--- community-testing-x86_64/latte-count.patch (rev 0)
+++ community-testing-x86_64/latte-count.patch 2021-08-30 19:33:51 UTC (rev 1010066)
@@ -0,0 +1,89 @@
+diff --git a/src/sage/geometry/polyhedron/base_ZZ.py b/src/sage/geometry/polyhedron/base_ZZ.py
+index 268af9db0d..70d41dfa30 100644
+--- a/src/sage/geometry/polyhedron/base_ZZ.py
++++ b/src/sage/geometry/polyhedron/base_ZZ.py
+@@ -193,7 +193,7 @@ class Polyhedron_ZZ(Polyhedron_base):
+ sage: p = P._ehrhart_polynomial_latte(maxdet=5, verbose=True) # optional - latte_int
+ This is LattE integrale ...
+ ...
+- Invocation: count --ehrhart-polynomial '--redundancy-check=none' --cdd '--maxdet=5' /dev/stdin
++ Invocation: latte-count --ehrhart-polynomial '--redundancy-check=none' --cdd '--maxdet=5' /dev/stdin
+ ...
+ sage: p # optional - latte_int
+ 1/2*t^2 + 3/2*t + 1
+@@ -201,7 +201,7 @@ class Polyhedron_ZZ(Polyhedron_base):
+ sage: p = P._ehrhart_polynomial_latte(dual=True, verbose=True) # optional - latte_int
+ This is LattE integrale ...
+ ...
+- Invocation: count --ehrhart-polynomial '--redundancy-check=none' --cdd --dual /dev/stdin
++ Invocation: latte-count --ehrhart-polynomial '--redundancy-check=none' --cdd --dual /dev/stdin
+ ...
+ sage: p # optional - latte_int
+ 1/2*t^2 + 3/2*t + 1
+@@ -209,7 +209,7 @@ class Polyhedron_ZZ(Polyhedron_base):
+ sage: p = P._ehrhart_polynomial_latte(irrational_primal=True, verbose=True) # optional - latte_int
+ This is LattE integrale ...
+ ...
+- Invocation: count --ehrhart-polynomial '--redundancy-check=none' --cdd --irrational-primal /dev/stdin
++ Invocation: latte-count --ehrhart-polynomial '--redundancy-check=none' --cdd --irrational-primal /dev/stdin
+ ...
+ sage: p # optional - latte_int
+ 1/2*t^2 + 3/2*t + 1
+@@ -217,7 +217,7 @@ class Polyhedron_ZZ(Polyhedron_base):
+ sage: p = P._ehrhart_polynomial_latte(irrational_all_primal=True, verbose=True) # optional - latte_int
+ This is LattE integrale ...
+ ...
+- Invocation: count --ehrhart-polynomial '--redundancy-check=none' --cdd --irrational-all-primal /dev/stdin
++ Invocation: latte-count --ehrhart-polynomial '--redundancy-check=none' --cdd --irrational-all-primal /dev/stdin
+ ...
+ sage: p # optional - latte_int
+ 1/2*t^2 + 3/2*t + 1
+@@ -229,7 +229,7 @@ class Polyhedron_ZZ(Polyhedron_base):
+ ...
+ RuntimeError: LattE integrale program failed (exit code 1):
+ ...
+- Invocation: count --ehrhart-polynomial '--redundancy-check=none' --cdd '--bim-bam-boum=19' /dev/stdin
++ Invocation: latte-count --ehrhart-polynomial '--redundancy-check=none' --cdd '--bim-bam-boum=19' /dev/stdin
+ Unknown command/option --bim-bam-boum=19
+ """
+ # note: the options below are explicitly written in the function
+diff --git a/src/sage/interfaces/latte.py b/src/sage/interfaces/latte.py
+index 066cedd401..302b39910d 100644
+--- a/src/sage/interfaces/latte.py
++++ b/src/sage/interfaces/latte.py
+@@ -95,7 +95,7 @@ def count(arg, ehrhart_polynomial=False, multivariate_generating_function=False,
+ sage: n = count(cddin, cdd=True, verbose=True, raw_output=True) # optional - latte_int
+ This is LattE integrale ...
+ ...
+- Invocation: count '--redundancy-check=none' --cdd /dev/stdin
++ Invocation: latte-count '--redundancy-check=none' --cdd /dev/stdin
+ ...
+ Total Unimodular Cones: ...
+ Maximum number of simplicial cones in memory at once: ...
+@@ -127,7 +127,7 @@ def count(arg, ehrhart_polynomial=False, multivariate_generating_function=False,
+
+ arg = str_to_bytes(arg)
+
+- args = ['count']
++ args = ['latte-count']
+ if ehrhart_polynomial and multivariate_generating_function:
+ raise ValueError
+ if ehrhart_polynomial:
+diff --git a/src/sage/features/latte.py b/src/sage/features/latte.py
+index 63d227fd35..040a5cf1f9 100644
+--- a/src/sage/features/latte.py
++++ b/src/sage/features/latte.py
+@@ -9,10 +9,10 @@ from . import Executable, Feature, FeatureTestResult
+
+ class Latte_count(Executable):
+ r"""
+- Feature for the executable ``count`` from the LattE suite.
++ Feature for the executable ``latte-count`` from the LattE suite.
+ """
+ def __init__(self):
+- Executable.__init__(self, "count", executable="count",
++ Executable.__init__(self, "latte-count", executable="latte-count",
+ spkg="latte_int",
+ url=LATTE_URL)
+
+
Copied: sagemath/repos/community-testing-x86_64/sagemath-lcalc2.patch (from rev 1010065, sagemath/trunk/sagemath-lcalc2.patch)
===================================================================
--- community-testing-x86_64/sagemath-lcalc2.patch (rev 0)
+++ community-testing-x86_64/sagemath-lcalc2.patch 2021-08-30 19:33:51 UTC (rev 1010066)
@@ -0,0 +1,507 @@
+diff --git a/src/sage/lfunctions/lcalc.py b/src/sage/lfunctions/lcalc.py
+index aabbd47..6efa5fe 100644
+--- a/src/sage/lfunctions/lcalc.py
++++ b/src/sage/lfunctions/lcalc.py
+@@ -225,19 +225,54 @@ class LCalc(SageObject):
+ EXAMPLES::
+
+ sage: I = CC.0
+- sage: lcalc.values_along_line(0.5, 0.5+20*I, 5)
+- [(0.500000000, -1.46035451), (0.500000000 + 4.00000000*I, 0.606783764 + 0.0911121400*I), (0.500000000 + 8.00000000*I, 1.24161511 + 0.360047588*I), (0.500000000 + 12.0000000*I, 1.01593665 - 0.745112472*I), (0.500000000 + 16.0000000*I, 0.938545408 + 1.21658782*I)]
++ sage: values = lcalc.values_along_line(0.5, 0.5+20*I, 5)
++ sage: values[0][0] # abs tol 1e-8
++ 0.5
++ sage: values[0][1] # abs tol 1e-8
++ -1.46035451 + 0.0*I
++ sage: values[1][0] # abs tol 1e-8
++ 0.5 + 4.0*I
++ sage: values[1][1] # abs tol 1e-8
++ 0.606783764 + 0.0911121400*I
++ sage: values[2][0] # abs tol 1e-8
++ 0.5 + 8.0*I
++ sage: values[2][1] # abs tol 1e-8
++ 1.24161511 + 0.360047588*I
++ sage: values[3][0] # abs tol 1e-8
++ 0.5 + 12.0*I
++ sage: values[3][1] # abs tol 1e-8
++ 1.01593665 - 0.745112472*I
++ sage: values[4][0] # abs tol 1e-8
++ 0.5 + 16.0*I
++ sage: values[4][1] # abs tol 1e-8
++ 0.938545408 + 1.21658782*I
+
+ Sometimes warnings are printed (by lcalc) when this command is
+ run::
+
+ sage: E = EllipticCurve('389a')
+- sage: E.lseries().values_along_line(0.5, 3, 5)
+- [(0.000000000, 0.209951303),
+- (0.500000000, -...e-16),
+- (1.00000000, 0.133768433),
+- (1.50000000, 0.360092864),
+- (2.00000000, 0.552975867)]
++ sage: values = E.lseries().values_along_line(0.5, 3, 5)
++ sage: values[0][0] # abs tol 1e-8
++ 0.0
++ sage: values[0][1] # abs tol 1e-8
++ 0.209951303 + 0.0*I
++ sage: values[1][0] # abs tol 1e-8
++ 0.5
++ sage: values[1][1] # abs tol 1e-8
++ 0.0 + 0.0*I
++ sage: values[2][0] # abs tol 1e-8
++ 1.0
++ sage: values[2][1] # abs tol 1e-8
++ 0.133768433 - 0.0*I
++ sage: values[3][0] # abs tol 1e-8
++ 1.5
++ sage: values[3][1] # abs tol 1e-8
++ 0.360092864 - 0.0*I
++ sage: values[4][0] # abs tol 1e-8
++ 2.0
++ sage: values[4][1] # abs tol 1e-8
++ 0.552975867 + 0.0*I
++
+ """
+ L = self._compute_L(L)
+ CC = sage.rings.all.ComplexField(prec)
+@@ -281,8 +316,31 @@ class LCalc(SageObject):
+
+ EXAMPLES::
+
+- sage: lcalc.twist_values(0.5, -10, 10)
+- [(-8, 1.10042141), (-7, 1.14658567), (-4, 0.667691457), (-3, 0.480867558), (5, 0.231750947), (8, 0.373691713)]
++ sage: values = lcalc.twist_values(0.5, -10, 10)
++ sage: values[0][0]
++ -8
++ sage: values[0][1] # abs tol 1e-8
++ 1.10042141 + 0.0*I
++ sage: values[1][0]
++ -7
++ sage: values[1][1] # abs tol 1e-8
++ 1.14658567 + 0.0*I
++ sage: values[2][0]
++ -4
++ sage: values[2][1] # abs tol 1e-8
++ 0.667691457 + 0.0*I
++ sage: values[3][0]
++ -3
++ sage: values[3][1] # abs tol 1e-8
++ 0.480867558 + 0.0*I
++ sage: values[4][0]
++ 5
++ sage: values[4][1] # abs tol 1e-8
++ 0.231750947 + 0.0*I
++ sage: values[5][0]
++ 8
++ sage: values[5][1] # abs tol 1e-8
++ 0.373691713 + 0.0*I
+ """
+ L = self._compute_L(L)
+ CC = sage.rings.all.ComplexField(prec)
+diff --git a/src/sage/lfunctions/zero_sums.pyx b/src/sage/lfunctions/zero_sums.pyx
+index 225fe7d..8b0e566 100644
+--- a/src/sage/lfunctions/zero_sums.pyx
++++ b/src/sage/lfunctions/zero_sums.pyx
+@@ -829,8 +829,11 @@ cdef class LFunctionZeroSum_abstract(SageObject):
+ EXAMPLES::
+
+ sage: E = EllipticCurve("11a")
+- sage: E.lseries().zeros(2)
+- [6.36261389, 8.60353962]
++ sage: zeros = E.lseries().zeros(2)
++ sage: zeros[0] # abs tol 1e-8
++ 6.36261389
++ sage: zeros[1] # abs tol 1e-8
++ 8.60353962
+
+ E is a rank zero curve; the lowest zero has imaginary part ~6.36. The
+ zero sum with tau=0 indicates that there are no zeros at the central
+diff --git a/src/sage/libs/lcalc/lcalc_Lfunction.pxd b/src/sage/libs/lcalc/lcalc_Lfunction.pxd
+index d1dbb5d..5edf084 100644
+--- a/src/sage/libs/lcalc/lcalc_Lfunction.pxd
++++ b/src/sage/libs/lcalc/lcalc_Lfunction.pxd
+@@ -21,7 +21,7 @@ cdef extern from "lcalc_sage.h":
+ int (* compute_rank) ()
+ double (* N) (double T)
+ void (* find_zeros_v)(double T1, double T2, double stepsize, doublevec result )
+- void (*find_zeros_via_N_v)(long count,int do_negative,double max_refine, int rank, int test_explicit_formula, doublevec result)
++ int (*find_zeros)(long count, long start, double max_refine, int rank, const char* message_stamp, doublevec* result)
+ void (*print_data_L)()
+
+ #Constructor and destructor
+@@ -38,7 +38,7 @@ cdef extern from "lcalc_sage.h":
+ double (* N) (double T)
+ double *dirichlet_coefficient
+ void (* find_zeros_v)(double T1, double T2, double stepsize, doublevec result )
+- void (*find_zeros_via_N_v)(long count,int do_negative,double max_refine, int rank, int test_explicit_formula, doublevec result)
++ int (*find_zeros)(long count, long start, double max_refine, int rank, const char* message_stamp, doublevec* result)
+ void (*print_data_L)()
+
+ #Constructor and destructor
+@@ -54,7 +54,7 @@ cdef extern from "lcalc_sage.h":
+ int (* compute_rank) ()
+ double (* N) (double T)
+ void (* find_zeros_v)(double T1, double T2, double stepsize, doublevec result )
+- void (*find_zeros_via_N_v)(long count,int do_negative,double max_refine, int rank, int test_explicit_formula, doublevec result)
++ int (*find_zeros)(long count, long start, double max_refine, int rank, const char* message_stamp, doublevec* result)
+ void (*print_data_L)()
+
+ #Constructor and destructor
+@@ -70,7 +70,7 @@ cdef extern from "lcalc_sage.h":
+ int (* compute_rank) ()
+ double (* N) (double T)
+ void (* find_zeros_v)(double T1, double T2, double stepsize, doublevec result )
+- void (*find_zeros_via_N_v)(long count,int do_negative,double max_refine, int rank, int test_explicit_formula, doublevec result)#puts result in vector<double> result
++ int (*find_zeros)(long count, long start, double max_refine, int rank, const char* message_stamp, doublevec* result)
+ void (*find_zeros_via_N)(long count,int do_negative,double max_refine, int rank, int test_explicit_formula, char *filename) #puts result in filename
+
+ #Constructor and destructor
+@@ -111,7 +111,7 @@ cdef class Lfunction:
+ #strange bug, replacing Double with double gives me a compile error
+ cdef Double __typedN(self, double T)
+ cdef void __find_zeros_v(self, double T1, double T2, double stepsize,doublevec *result)
+- cdef void __find_zeros_via_N_v(self, long count,int do_negative,double max_refine, int rank, int test_explicit_formula,doublevec *result)
++ cdef int __find_zeros(self, long count, long start, double max_refine, int rank, const char* message_stamp, doublevec* result)
+
+ cdef str _repr
+
+diff --git a/src/sage/libs/lcalc/lcalc_Lfunction.pyx b/src/sage/libs/lcalc/lcalc_Lfunction.pyx
+index 7e54d7e..88a6e13 100644
+--- a/src/sage/libs/lcalc/lcalc_Lfunction.pyx
++++ b/src/sage/libs/lcalc/lcalc_Lfunction.pyx
+@@ -143,29 +143,29 @@ cdef class Lfunction:
+ sage: chi = DirichletGroup(5)[2] #This is a quadratic character
+ sage: from sage.libs.lcalc.lcalc_Lfunction import *
+ sage: L=Lfunction_from_character(chi, type="int")
+- sage: L.value(.5) # abs tol 3e-15
++ sage: L.value(.5) # abs tol 1e-8
+ 0.231750947504016 + 5.75329642226136e-18*I
+- sage: L.value(.2+.4*I)
+- 0.102558603193... + 0.190840777924...*I
++ sage: L.value(.2+.4*I) # abs tol 1e-8
++ 0.102558603193 + 0.190840777924*I
+
+ sage: L=Lfunction_from_character(chi, type="double")
+- sage: L.value(.6) # abs tol 3e-15
++ sage: L.value(.6) # abs tol 1e-8
+ 0.274633355856345 + 6.59869267328199e-18*I
+- sage: L.value(.6+I)
+- 0.362258705721... + 0.433888250620...*I
++ sage: L.value(.6+I) # abs tol 1e-8
++ 0.362258705721 + 0.433888250620*I
+
+ sage: chi = DirichletGroup(5)[1]
+ sage: L=Lfunction_from_character(chi, type="complex")
+- sage: L.value(.5)
+- 0.763747880117... + 0.216964767518...*I
+- sage: L.value(.6+5*I)
+- 0.702723260619... - 1.10178575243...*I
++ sage: L.value(.5) # abs tol 1e-8
++ 0.763747880117 + 0.216964767518*I
++ sage: L.value(.6+5*I) # abs tol 1e-8
++ 0.702723260619 - 1.10178575243*I
+
+ sage: L=Lfunction_Zeta()
+- sage: L.value(.5)
+- -1.46035450880...
+- sage: L.value(.4+.5*I)
+- -0.450728958517... - 0.780511403019...*I
++ sage: L.value(.5) # abs tol 1e-8
++ -1.46035450880 + 0.0*I
++ sage: L.value(.4+.5*I) # abs tol 1e-8
++ -0.450728958517 - 0.780511403019*I
+ """
+ cdef ComplexNumber complexified_s = CCC(s)
+ cdef c_Complex z = new_Complex(mpfr_get_d(complexified_s.__re, MPFR_RNDN), mpfr_get_d(complexified_s.__im, MPFR_RNDN))
+@@ -185,23 +185,21 @@ cdef class Lfunction:
+ sage: chi = DirichletGroup(5)[2] # Quadratic character
+ sage: from sage.libs.lcalc.lcalc_Lfunction import *
+ sage: L = Lfunction_from_character(chi, type="int")
+- sage: L.hardy_z_function(0)
+- 0.231750947504...
+- sage: L.hardy_z_function(.5).imag() # abs tol 1e-15
++ sage: L.hardy_z_function(0) # abs tol 1e-8
++ 0.231750947504 + 0.0*I
++ sage: L.hardy_z_function(.5).imag() # abs tol 1e-8
+ 1.17253174178320e-17
+- sage: L.hardy_z_function(.4+.3*I)
+- 0.2166144222685... - 0.00408187127850...*I
+ sage: chi = DirichletGroup(5)[1]
+ sage: L = Lfunction_from_character(chi, type="complex")
+- sage: L.hardy_z_function(0)
+- 0.793967590477...
+- sage: L.hardy_z_function(.5).imag() # abs tol 1e-15
++ sage: L.hardy_z_function(0) # abs tol 1e-8
++ 0.793967590477 + 0.0*I
++ sage: L.hardy_z_function(.5).imag() # abs tol 1e-8
+ 0.000000000000000
+ sage: E = EllipticCurve([-82,0])
+ sage: L = Lfunction_from_elliptic_curve(E, number_of_coeffs=40000)
+- sage: L.hardy_z_function(2.1)
+- -0.00643179176869...
+- sage: L.hardy_z_function(2.1).imag() # abs tol 1e-15
++ sage: L.hardy_z_function(2.1) # abs tol 1e-8
++ -0.00643179176863296 - 1.47189978221606e-19*I
++ sage: L.hardy_z_function(2.1).imag() # abs tol 1e-8
+ -3.93833660115668e-19
+ """
+ #This takes s -> .5 + I*s
+@@ -241,8 +239,8 @@ cdef class Lfunction:
+ sage: from sage.libs.lcalc.lcalc_Lfunction import *
+ sage: chi = DirichletGroup(5)[2] #This is a quadratic character
+ sage: L=Lfunction_from_character(chi, type="complex")
+- sage: L.__N(10)
+- 3.17043978326...
++ sage: L.__N(10) # abs tol 1e-8
++ 4.0
+ """
+ cdef RealNumber real_T=RRR(T)
+ cdef double double_T = mpfr_get_d(real_T.value, MPFR_RNDN)
+@@ -307,18 +305,21 @@ cdef class Lfunction:
+ return returnvalue
+
+ #The default values are from L.h. See L.h
+- def find_zeros_via_N(self, count=0, do_negative=False, max_refine=1025,
+- rank=-1, test_explicit_formula=0):
++ def find_zeros_via_N(self, count=0, start=0, max_refine=1025, rank=-1):
+ """
+- Finds ``count`` number of zeros with positive imaginary part
+- starting at real axis. This function also verifies that all
+- the zeros have been found.
++ Find ``count`` zeros (in order of increasing magnitude) and output
++ their imaginary parts. This function verifies that no zeros
++ are missed, and that all values output are indeed zeros.
++
++ If this L-function is self-dual (if its Dirichlet coefficients
++ are real, up to a tolerance of 1e-6), then only the zeros with
++ positive imaginary parts are output. Their conjugates, which
++ are also zeros, are not output.
+
+ INPUT:
+
+ - ``count`` - number of zeros to be found
+- - ``do_negative`` - (default: False) False to ignore zeros below the
+- real axis.
++ - ``start`` - (default: 0) how many initial zeros to skip
+ - ``max_refine`` - when some zeros are found to be missing, the step
+ size used to find zeros is refined. max_refine gives an upper limit
+ on when lcalc should give up. Use default value unless you know
+@@ -326,13 +327,9 @@ cdef class Lfunction:
+ - ``rank`` - integer (default: -1) analytic rank of the L-function.
+ If -1 is passed, then we attempt to compute it. (Use default if in
+ doubt)
+- - ``test_explicit_formula`` - integer (default: 0) If nonzero, test
+- the explicit formula for additional confidence that all the zeros
+- have been found and are accurate. This is still being tested, so
+- using the default is recommended.
+
+ OUTPUT:
+-
++
+ list -- A list of the imaginary parts of the zeros that have been found
+
+ EXAMPLES::
+@@ -349,21 +346,26 @@ cdef class Lfunction:
+
+ sage: chi = DirichletGroup(5)[1]
+ sage: L=Lfunction_from_character(chi, type="complex")
+- sage: L.find_zeros_via_N(3)
+- [6.18357819545..., 8.45722917442..., 12.6749464170...]
++ sage: zeros = L.find_zeros_via_N(3)
++ sage: zeros[0] # abs tol 1e-8
++ -4.13290370521286
++ sage: zeros[1] # abs tol 1e-8
++ 6.18357819545086
++ sage: zeros[2] # abs tol 1e-8
++ 8.45722917442320
+
+ sage: L=Lfunction_Zeta()
+ sage: L.find_zeros_via_N(3)
+ [14.1347251417..., 21.0220396387..., 25.0108575801...]
+ """
+- cdef Integer count_I = Integer(count)
+- cdef Integer do_negative_I = Integer(do_negative)
+- cdef RealNumber max_refine_R = RRR(max_refine)
+- cdef Integer rank_I = Integer(rank)
+- cdef Integer test_explicit_I = Integer(test_explicit_formula)
++
++ # This is the default value for message_stamp, but we have to
++ # pass it explicitly since we're passing in the next argument,
++ # our &result pointer.
++ cdef const char* message_stamp = ""
+ cdef doublevec result
+ sig_on()
+- self.__find_zeros_via_N_v(mpz_get_si(count_I.value), mpz_get_si(do_negative_I.value), mpfr_get_d(max_refine_R.value, MPFR_RNDN), mpz_get_si(rank_I.value), mpz_get_si(test_explicit_I.value), &result)
++ self.__find_zeros(count, start, max_refine, rank, message_stamp, &result)
+ sig_off()
+ returnvalue = []
+ for i in range(result.size()):
+@@ -390,7 +392,7 @@ cdef class Lfunction:
+ cdef void __find_zeros_v(self,double T1, double T2, double stepsize, doublevec *result):
+ raise NotImplementedError
+
+- cdef void __find_zeros_via_N_v(self, long count,int do_negative,double max_refine, int rank, int test_explicit_formula, doublevec *result):
++ cdef int __find_zeros(self, long count, long start, double max_refine, int rank, const char* message_stamp, doublevec *result):
+ raise NotImplementedError
+
+ ##############################################################################
+@@ -486,8 +488,8 @@ cdef class Lfunction_I(Lfunction):
+ cdef double __typedN(self, double T):
+ return (<c_Lfunction_I *>self.thisptr).N(T)
+
+- cdef void __find_zeros_via_N_v(self, long count,int do_negative,double max_refine, int rank, int test_explicit_formula, doublevec *result):
+- (<c_Lfunction_I *>self.thisptr).find_zeros_via_N_v(count, do_negative, max_refine, rank, test_explicit_formula, result[0])
++ cdef int __find_zeros(self, long count, long start, double max_refine, int rank, const char* message_stamp, doublevec *result):
++ (<c_Lfunction_I *>self.thisptr).find_zeros(count, start, max_refine, rank, message_stamp, result)
+
+ # debug tools
+ def _print_data_to_standard_output(self):
+@@ -500,7 +502,7 @@ cdef class Lfunction_I(Lfunction):
+ sage: from sage.libs.lcalc.lcalc_Lfunction import *
+ sage: chi = DirichletGroup(5)[2] #This is a quadratic character
+ sage: L=Lfunction_from_character(chi, type="int")
+- sage: L._print_data_to_standard_output() # tol 1e-15
++ sage: L._print_data_to_standard_output() # tol 1e-8
+ -----------------------------------------------
+ <BLANKLINE>
+ Name of L_function:
+@@ -624,8 +626,8 @@ cdef class Lfunction_D(Lfunction):
+ cdef double __typedN(self, double T):
+ return (<c_Lfunction_D *>self.thisptr).N(T)
+
+- cdef void __find_zeros_via_N_v(self, long count,int do_negative,double max_refine, int rank, int test_explicit_formula, doublevec *result):
+- (<c_Lfunction_D *>self.thisptr).find_zeros_via_N_v(count, do_negative, max_refine, rank, test_explicit_formula, result[0])
++ cdef int __find_zeros(self, long count, long start,double max_refine, int rank, const char* message_stamp, doublevec *result):
++ (<c_Lfunction_D *>self.thisptr).find_zeros(count, start, max_refine, rank, message_stamp, result)
+
+ # debug tools
+ def _print_data_to_standard_output(self):
+@@ -638,7 +640,7 @@ cdef class Lfunction_D(Lfunction):
+ sage: from sage.libs.lcalc.lcalc_Lfunction import *
+ sage: chi = DirichletGroup(5)[2] #This is a quadratic character
+ sage: L=Lfunction_from_character(chi, type="double")
+- sage: L._print_data_to_standard_output() # tol 1e-15
++ sage: L._print_data_to_standard_output() # tol 1e-8
+ -----------------------------------------------
+ <BLANKLINE>
+ Name of L_function:
+@@ -769,8 +771,8 @@ cdef class Lfunction_C:
+ cdef double __typedN(self, double T):
+ return (<c_Lfunction_C *>self.thisptr).N(T)
+
+- cdef void __find_zeros_via_N_v(self, long count,int do_negative,double max_refine, int rank, int test_explicit_formula, doublevec *result):
+- (<c_Lfunction_C *>self.thisptr).find_zeros_via_N_v(count, do_negative, max_refine, rank, test_explicit_formula, result[0])
++ cdef int __find_zeros(self, long count, long start, double max_refine, int rank, const char* message_stamp, doublevec *result):
++ (<c_Lfunction_C *>self.thisptr).find_zeros(count, start, max_refine, rank, message_stamp, result)
+
+ # debug tools
+ def _print_data_to_standard_output(self):
+@@ -783,7 +785,7 @@ cdef class Lfunction_C:
+ sage: from sage.libs.lcalc.lcalc_Lfunction import *
+ sage: chi = DirichletGroup(5)[1]
+ sage: L=Lfunction_from_character(chi, type="complex")
+- sage: L._print_data_to_standard_output() # tol 1e-15
++ sage: L._print_data_to_standard_output() # tol 1e-8
+ -----------------------------------------------
+ <BLANKLINE>
+ Name of L_function:
+@@ -854,8 +856,8 @@ cdef class Lfunction_Zeta(Lfunction):
+ cdef double __typedN(self, double T):
+ return (<c_Lfunction_Zeta *>self.thisptr).N(T)
+
+- cdef void __find_zeros_via_N_v(self, long count,int do_negative,double max_refine, int rank, int test_explicit_formula, doublevec *result):
+- (<c_Lfunction_Zeta *>self.thisptr).find_zeros_via_N_v(count, do_negative, max_refine, rank, test_explicit_formula, result[0])
++ cdef int __find_zeros(self, long count, long start, double max_refine, int rank, const char* message_stamp, doublevec *result):
++ (<c_Lfunction_Zeta *>self.thisptr).find_zeros(count, start, max_refine, rank, message_stamp, result)
+
+ def __dealloc__(self):
+ """
+@@ -950,10 +952,11 @@ def Lfunction_from_elliptic_curve(E, number_of_coeffs=10000):
+ sage: L = Lfunction_from_elliptic_curve(EllipticCurve('37'))
+ sage: L
+ L-function with real Dirichlet coefficients
+- sage: L.value(0.5).abs() < 1e-15 # "noisy" zero on some platforms (see #9615)
++ sage: L.value(0.5).abs() < 1e-8 # "noisy" zero on some platforms (see #9615)
+ True
+- sage: L.value(0.5, derivative=1)
+- 0.305999...
++ sage: L.value(0.5, derivative=1) # abs tol 1e-6
++ 0.305999773835200 + 0.0*I
++
+ """
+ import sage.libs.lcalc.lcalc_Lfunction
+ Q = RRR(E.conductor()).sqrt() / RRR(2 * pi)
+diff --git a/src/sage/libs/lcalc/lcalc_sage.h b/src/sage/libs/lcalc/lcalc_sage.h
+index 4985289..891a40c 100644
+--- a/src/sage/libs/lcalc/lcalc_sage.h
++++ b/src/sage/libs/lcalc/lcalc_sage.h
+@@ -1,4 +1,4 @@
+-#include "Lfunction/L.h"
++#include "lcalc/L.h"
+ int *new_ints(int l)
+ {
+ return new int[l];
+@@ -62,4 +62,3 @@ void testL(L_function<Complex> *L)
+ cout << "Value at 1" << L->value(1.0) <<endl;
+ cout << "Value at .5+I" << L->value(.5+I) <<endl;
+ }
+-
+diff --git a/src/sage/modular/dirichlet.py b/src/sage/modular/dirichlet.py
+index d101f6a..23a9b1b 100644
+--- a/src/sage/modular/dirichlet.py
++++ b/src/sage/modular/dirichlet.py
+@@ -751,8 +751,8 @@ class DirichletCharacter(MultiplicativeGroupElement):
+ sage: a = a.primitive_character()
+ sage: L = a.lfunction(algorithm='lcalc'); L
+ L-function with complex Dirichlet coefficients
+- sage: L.value(4) # abs tol 1e-14
+- 0.988944551741105 - 5.16608739123418e-18*I
++ sage: L.value(4) # abs tol 1e-8
++ 0.988944551741105 + 0.0*I
+ """
+ if algorithm is None:
+ algorithm = 'pari'
+diff --git a/src/sage/schemes/elliptic_curves/ell_rational_field.py b/src/sage/schemes/elliptic_curves/ell_rational_field.py
+index bda999e..1736ce4 100644
+--- a/src/sage/schemes/elliptic_curves/ell_rational_field.py
++++ b/src/sage/schemes/elliptic_curves/ell_rational_field.py
+@@ -1516,7 +1516,7 @@ class EllipticCurve_rational_field(EllipticCurve_number_field):
+ sage: EllipticCurve([1234567,89101112]).analytic_rank(algorithm='rubinstein')
+ Traceback (most recent call last):
+ ...
+- RuntimeError: unable to compute analytic rank using rubinstein algorithm (unable to convert ' 6.19283e+19 and is too large' to an integer)
++ RuntimeError: unable to compute analytic rank using rubinstein algorithm (unable to convert ' 6.19283... and is too large' to an integer)
+ sage: EllipticCurve([1234567,89101112]).analytic_rank(algorithm='sympow')
+ Traceback (most recent call last):
+ ...
+diff --git a/src/sage/schemes/elliptic_curves/lseries_ell.py b/src/sage/schemes/elliptic_curves/lseries_ell.py
+index 1fcd02f..8536db5 100644
+--- a/src/sage/schemes/elliptic_curves/lseries_ell.py
++++ b/src/sage/schemes/elliptic_curves/lseries_ell.py
+@@ -400,8 +400,22 @@ class Lseries_ell(SageObject):
+
+ sage: E = EllipticCurve('37a')
+ sage: vals = E.lseries().twist_values(1, -12, -4)
+- sage: vals # abs tol 1e-15
+- [(-11, 1.47824342), (-8, 8.9590946e-18), (-7, 1.85307619), (-4, 2.45138938)]
++ sage: vals[0][0]
++ -11
++ sage: vals[0][1] # abs tol 1e-8
++ 1.47824342 + 0.0*I
++ sage: vals[1][0]
++ -8
++ sage: vals[1][1] # abs tol 1e-8
++ 0.0 + 0.0*I
++ sage: vals[2][0]
++ -7
++ sage: vals[2][1] # abs tol 1e-8
++ 1.85307619 + 0.0*I
++ sage: vals[3][0]
++ -4
++ sage: vals[3][1] # abs tol 1e-8
++ 2.45138938 + 0.0*I
+ sage: F = E.quadratic_twist(-8)
+ sage: F.rank()
+ 1
+
Copied: sagemath/repos/community-testing-x86_64/sagemath-lrcalc2.patch (from rev 1010065, sagemath/trunk/sagemath-lrcalc2.patch)
===================================================================
--- community-testing-x86_64/sagemath-lrcalc2.patch (rev 0)
+++ community-testing-x86_64/sagemath-lrcalc2.patch 2021-08-30 19:33:51 UTC (rev 1010066)
@@ -0,0 +1,573 @@
+diff --git a/build/pkgs/lrcalc/checksums.ini b/build/pkgs/lrcalc/checksums.ini
+index 7a0e6a1b96..70de56c40d 100644
+--- a/build/pkgs/lrcalc/checksums.ini
++++ b/build/pkgs/lrcalc/checksums.ini
+@@ -1,4 +1,5 @@
+ tarball=lrcalc-VERSION.tar.gz
+-sha1=89c288875bc3e3e2919876cb645bdfd7316b5965
+-md5=6bba16c0cca9debccd0af847bd3d4a23
+-cksum=3738483656
++sha1=2a98661eb39c7ef526c932f7886fc3142fd639ab
++md5=7cfa8f67287f2b70a15a833b94bc24b6
++cksum=2250996027
++upstream_url=https://sites.math.rutgers.edu/~asbuch/lrcalc/lrcalc-VERSION.tar.gz
+diff --git a/build/pkgs/lrcalc/package-version.txt b/build/pkgs/lrcalc/package-version.txt
+index 92ab3427e8..879b416e60 100644
+--- a/build/pkgs/lrcalc/package-version.txt
++++ b/build/pkgs/lrcalc/package-version.txt
+@@ -1 +1 @@
+-1.2.p1
++2.1
+diff --git a/build/pkgs/lrcalc/patches/includes.patch b/build/pkgs/lrcalc/patches/includes.patch
+deleted file mode 100644
+index 707da176a6..0000000000
+--- a/build/pkgs/lrcalc/patches/includes.patch
++++ /dev/null
+@@ -1,90 +0,0 @@
+-From 4a5e1c8c3c11efdb1cbb4239825a6bf4bf1c52f8 Mon Sep 17 00:00:00 2001
+-From: Anders Skovsted Buch <asbuch at math.rutgers.edu>
+-Date: Sun, 29 Nov 2015 16:25:56 -0500
+-Subject: [PATCH] Patch by Jeroen Demeyer to change include <vector.h> to
+- "vector.h", plus similar cases.
+-
+----
+- src/lrcalc.c | 2 +-
+- src/maple.c | 4 ++--
+- src/schublib.h | 2 +-
+- src/symfcn.c | 6 +++---
+- src/symfcn.h | 4 ++--
+- 5 files changed, 9 insertions(+), 9 deletions(-)
+-
+-diff --git a/src/lrcalc.c b/src/lrcalc.c
+-index aff3f75..60df49e 100644
+---- a/src/lrcalc.c
+-+++ b/src/lrcalc.c
+-@@ -8,7 +8,7 @@
+- #include <stdlib.h>
+- extern char *optarg;
+-
+--#include <vectarg.h>
+-+#include "vectarg.h"
+-
+- #include "symfcn.h"
+- #include "maple.h"
+-diff --git a/src/maple.c b/src/maple.c
+-index fdc0768..a5f4d14 100644
+---- a/src/maple.c
+-+++ b/src/maple.c
+-@@ -4,8 +4,8 @@
+- */
+-
+- #include <stdio.h>
+--#include <vector.h>
+--#include <hashtab.h>
+-+#include "vector.h"
+-+#include "hashtab.h"
+- #include "maple.h"
+-
+-
+-diff --git a/src/schublib.h b/src/schublib.h
+-index a8e8511..864850c 100644
+---- a/src/schublib.h
+-+++ b/src/schublib.h
+-@@ -1,7 +1,7 @@
+- #ifndef _SCHUBLIB_H
+- #define _SCHUBLIB_H
+-
+--#include <hashtab.h>
+-+#include "hashtab.h"
+-
+- hashtab *trans(vector *w, int vars, hashtab *res);
+- hashtab *monk(int i, hashtab *slc, int rank);
+-diff --git a/src/symfcn.c b/src/symfcn.c
+-index 4ffbe4b..fd5df5d 100644
+---- a/src/symfcn.c
+-+++ b/src/symfcn.c
+-@@ -5,9 +5,9 @@
+-
+- #include <stdio.h>
+-
+--#include <alloc.h>
+--#include <vector.h>
+--#include <hashtab.h>
+-+#include "alloc.h"
+-+#include "vector.h"
+-+#include "hashtab.h"
+-
+- #include "symfcn.h"
+-
+-diff --git a/src/symfcn.h b/src/symfcn.h
+-index b8543b1..29bb00d 100644
+---- a/src/symfcn.h
+-+++ b/src/symfcn.h
+-@@ -1,8 +1,8 @@
+- #ifndef _SYMFCN_H
+- #define _SYMFCN_H
+-
+--#include <hashtab.h>
+--#include <vector.h>
+-+#include "hashtab.h"
+-+#include "vector.h"
+-
+- int part_itr_sz(vector *part);
+- int part_itr_sub(vector *part, vector *outer);
+---
+-2.1.1.1.g1fb337f
+-
+diff --git a/build/pkgs/lrcalc/spkg-install.in b/build/pkgs/lrcalc/spkg-install.in
+index d6665bfb42..a34493b776 100644
+--- a/build/pkgs/lrcalc/spkg-install.in
++++ b/build/pkgs/lrcalc/spkg-install.in
+@@ -7,3 +7,6 @@ cp "$SAGE_ROOT"/config/config.sub .
+ sdh_configure
+ sdh_make
+ sdh_make_install
++
++cd python
++sdh_pip_install .
+diff --git a/src/sage/libs/lrcalc/lrcalc.pxd b/src/sage/libs/lrcalc/lrcalc.pxd
+deleted file mode 100644
+index 10b88db93f..0000000000
+--- a/src/sage/libs/lrcalc/lrcalc.pxd
++++ /dev/null
+@@ -1,77 +0,0 @@
+-# distutils: libraries = lrcalc
+-
+-cdef extern from "lrcalc/hashtab.h":
+- ctypedef struct hashtab:
+- pass
+-
+- ctypedef struct hash_itr:
+- pass
+-
+- ctypedef unsigned long hashkey_t
+- ctypedef int (*cmp_t) (void* a, void* b)
+- ctypedef hashkey_t (*hash_t) (void* a)
+-
+- hashtab* hash_new(cmp_t cm, hash_t hsh)
+- void hash_free(hashtab *ht)
+-
+- void* hash_lookup(hashtab *ht, void *key)
+- void* hash_insert(hashtab *ht, void *key, void *value)
+-
+- bint hash_good(hash_itr)
+- void hash_first(hashtab* s, hash_itr itr)
+- void hash_next(hash_itr itr)
+- void* hash_key(hash_itr itr)
+- void* hash_value(hash_itr itr)
+- int hash_intvalue(hash_itr itr)
+-
+-cdef extern from "lrcalc/vector.h":
+- ctypedef struct vector:
+- size_t length
+- int* array
+-
+- vector* v_new(int length)
+- void v_free(vector* v)
+- void v_print(vector *v)
+- int v_length(vector* v)
+- int v_elem(vector* v, int i)
+-
+- ctypedef struct vecpair:
+- vector *first
+- vector *second
+-
+- vector* vp_first(vecpair* vp)
+- vector* vp_second(vecpair* vp)
+-
+-cdef extern from "lrcalc/list.h":
+- cdef struct _list:
+- void **array
+- size_t allocated
+- size_t length
+- void l_free(_list *lst)
+-
+-cdef extern from "lrcalc/symfcn.h":
+- long long lrcoef_c "lrcoef"(vector* outer, vector* inner1, vector* inner2)
+- hashtab* mult_c "mult"(vector *sh1, vector *sh2, int maxrows)
+- hashtab* skew_c "skew"(vector *outer, vector *inner, int maxrows)
+- hashtab* coprod_c "coprod"(vector *part, int all)
+- void fusion_reduce_c "fusion_reduce"(hashtab* ht, int rows, int cols, int opt_zero)
+- _list *quantum_reduce_c "quantum_reduce"(hashtab* ht, int rows, int col)
+-
+- ctypedef struct skewtab:
+- vector *outer
+- vector *inner
+- vector *conts
+- int maxrows
+- vector *conjugate
+- int rows
+- int cols
+- int matrix[1]
+-
+- skewtab *st_new(vector *outer, vector *inner, vector *conts, int maxrows)
+- int st_next(skewtab *st)
+- void st_print(skewtab *st)
+- void st_free(skewtab *st)
+-
+-
+-cdef extern from "lrcalc/schublib.h":
+- hashtab* mult_schubert_c "mult_schubert"(vector *sh1, vector *sh2, int rank)
+diff --git a/src/sage/libs/lrcalc/lrcalc.pyx b/src/sage/libs/lrcalc/lrcalc.py
+similarity index 65%
+rename from src/sage/libs/lrcalc/lrcalc.pyx
+rename to src/sage/libs/lrcalc/lrcalc.py
+index 1cf67dc15a..d4e2f5d538 100644
+--- a/src/sage/libs/lrcalc/lrcalc.pyx
++++ b/src/sage/libs/lrcalc/lrcalc.py
+@@ -187,180 +187,16 @@ AUTHORS:
+ # https://www.gnu.org/licenses/
+ # ****************************************************************************
+
+-from sage.rings.integer cimport Integer
+-from sage.structure.parent cimport Parent
+ from sage.combinat.partition import _Partitions
+ from sage.combinat.permutation import Permutation
+-from sage.combinat.skew_tableau import SkewTableau
+-
+-
+-cdef vector* iterable_to_vector(it):
+- """
+- Return an lrcalc vector (which is a list of integers) from a Python iterable.
+-
+- TESTS::
+-
+- sage: from sage.libs.lrcalc.lrcalc import test_iterable_to_vector
+- sage: x = test_iterable_to_vector(Partition([3,2,1])); x #indirect doctest
+- [3, 2, 1]
+- """
+- cdef vector* v
+- cdef list itr = list(it)
+- cdef int n = len(itr)
+- cdef int i
+- v = v_new(n)
+- for i in range(n):
+- v.array[i] = int(itr[i])
+- return v
+-
+-
+-cdef list vector_to_list(vector *v):
+- """
+- Converts a lrcalc vector to Python list.
+-
+- TESTS::
+-
+- sage: from sage.libs.lrcalc.lrcalc import test_iterable_to_vector
+- sage: x = test_iterable_to_vector([]); x #indirect doctest
+- []
+- """
+- cdef int i, n
+- n = v_length(v)
+- cdef list result = [None]*n
+- for i in range(n):
+- result[i] = Integer(v_elem(v, i))
+- return result
+-
+-
+-def test_iterable_to_vector(it):
+- """
+- A wrapper function for the cdef function ``iterable_to_vector``
+- and ``vector_to_list``, to test that they are working correctly.
+-
+- EXAMPLES::
+-
+- sage: from sage.libs.lrcalc.lrcalc import test_iterable_to_vector
+- sage: x = test_iterable_to_vector([3,2,1]); x
+- [3, 2, 1]
+- """
+- cdef vector *v = iterable_to_vector(it)
+- result = vector_to_list(v)
+- v_free(v)
+- return result
+-
+-
+-cdef skewtab_to_SkewTableau(skewtab *st):
+- """
+- A wrapper function which transforms the data set ``st`` used in
+- ``lrcalc`` to a ``SkewTableau`` in Sage.
+-
+- TESTS::
+-
+- sage: from sage.libs.lrcalc.lrcalc import test_skewtab_to_SkewTableau
+- sage: test_skewtab_to_SkewTableau([],[])
+- []
+- """
+- inner = vector_to_list(st.inner)
+- outer = vector_to_list(st.outer)
+- return SkewTableau(expr=[[inner[y] for y in range(len(outer))],
+- [[st.matrix[x + y * st.cols] + 1
+- for x in range(inner[y], outer[y])]
+- for y in range(len(outer) - 1, -1, -1)]])
+-
+-
+-def test_skewtab_to_SkewTableau(outer, inner):
+- """
+- A wrapper function for the cdef function ``skewtab_to_SkewTableau``
+- for testing purposes.
+-
+- It constructs the first LR skew tableau of shape ``outer/inner``
+- as an ``lrcalc`` ``skewtab``, and converts it to a
+- :class:`SkewTableau`.
+-
+- EXAMPLES::
+-
+- sage: from sage.libs.lrcalc.lrcalc import test_skewtab_to_SkewTableau
+- sage: test_skewtab_to_SkewTableau([3,2,1],[])
+- [[1, 1, 1], [2, 2], [3]]
+- sage: test_skewtab_to_SkewTableau([4,3,2,1],[1,1]).pp()
+- . 1 1 1
+- . 2 2
+- 1 3
+- 2
+- """
+- cdef vector* o = iterable_to_vector(outer)
+- cdef vector* i = iterable_to_vector(inner+[0]*(len(outer)-len(inner)))
+- cdef skewtab* st = st_new(o, i, NULL, 0)
+- return skewtab_to_SkewTableau(st)
+-
+-
+-cdef dict sf_hashtab_to_dict(hashtab *ht):
+- """
+- Return a dictionary representing a Schur function. The keys are
+- partitions and the values are integers <type 'sage.rings.integer.Integer'>.
+-
+- EXAMPLES::
+-
+- sage: from sage.libs.lrcalc.lrcalc import mult
+- sage: sorted(mult([1],[1]).items()) #indirect doctest
+- [([1, 1], 1), ([2], 1)]
+- sage: assert isinstance(mult([1],[1]),dict)#indirect doctest
+- """
+- cdef hash_itr itr
+- cdef dict result = {}
+- cdef list p
+- hash_first(ht, itr)
+- while hash_good(itr):
+- p = vector_to_list(<vector*> hash_key(itr))
+- result[_Partitions(p)] = Integer(hash_intvalue(itr))
+- hash_next(itr)
+- return result
+-
+-
+-cdef dict schubert_hashtab_to_dict(hashtab *ht):
+- """
+- Return a dictionary corresponding to a Schubert polynomial whose keys
+- are permutations and whose values are integers <type 'sage.rings.integer.Integer'>.
+-
+- EXAMPLES::
+-
+- sage: from sage.libs.lrcalc.lrcalc import mult_schubert
+- sage: mult_schubert([3,2,1], [1,2,3]) #indirect doctest
+- {[3, 2, 1]: 1}
+- """
+- cdef hash_itr itr
+- cdef dict result = {}
+- hash_first(ht, itr)
+- while hash_good(itr):
+- p = vector_to_list(<vector*> hash_key(itr))
+- result[Permutation(p)] = Integer(hash_intvalue(itr))
+- hash_next(itr)
+- return result
+-
+-
+-cdef dict vp_hashtab_to_dict(hashtab *ht):
+- """
+- Return a dictionary corresponding to the coproduct of a Schur function whose keys are
+- pairs of partitions and whose values are integers <type 'sage.rings.integer.Integer'>.
+-
+- EXAMPLES::
+-
+- sage: from sage.libs.lrcalc.lrcalc import coprod
+- sage: coprod([1]) #indirect doctest
+- {([1], []): 1}
+- """
+- cdef hash_itr itr
+- cdef vecpair* vp
+- cdef dict result = {}
+- hash_first(ht, itr)
+- while hash_good(itr):
+- vp = <vecpair*> hash_key(itr)
+- p1 = _Partitions(vector_to_list(vp_first(vp)))
+- p2 = _Partitions(vector_to_list(vp_second(vp)))
+- result[(p1, p2)] = Integer(hash_intvalue(itr))
+- hash_next(itr)
+- return result
++from sage.combinat.skew_tableau import SkewTableaux
++from sage.combinat.skew_partition import SkewPartition
++from sage.combinat.words.word import Word
++from sage.rings.integer import Integer
++import lrcalc
+
++def _lrcalc_dict_to_sage(result):
++ return dict({_Partitions(i):Integer(k) for i,k in result.items()})
+
+ def lrcoef_unsafe(outer, inner1, inner2):
+ r"""
+@@ -392,18 +228,7 @@ def lrcoef_unsafe(outer, inner1, inner2):
+ sage: lrcoef_unsafe([2,1,1,1,1], [2,1], [2,1])
+ 0
+ """
+- cdef long long result
+- cdef vector *o
+- cdef vector *i1
+- cdef vector *i2
+- o = iterable_to_vector(outer)
+- i1 = iterable_to_vector(inner1)
+- i2 = iterable_to_vector(inner2)
+- result = lrcoef_c(o, i1, i2)
+- v_free(o)
+- v_free(i1)
+- v_free(i2)
+- return Integer(result)
++ return Integer(lrcalc.lrcoef(outer, inner1, inner2))
+
+
+ def lrcoef(outer, inner1, inner2):
+@@ -510,44 +335,23 @@ def mult(part1, part2, maxrows=None, level=None, quantum=None):
+ if quantum is not None and (level is None or maxrows is None):
+ raise ValueError('missing parameters maxrows or level')
+
+- cdef vector* v1 = iterable_to_vector(part1)
+- cdef vector* v2 = iterable_to_vector(part2)
+- if maxrows is None:
+- maxrows = 0
+- cdef hashtab* ht = mult_c(v1, v2, int(maxrows))
+- cdef hashtab* tab
+- cdef dict result
+-
+ if quantum is None:
+ if level is not None:
+- fusion_reduce_c(ht, int(maxrows), int(level), int(0))
+- result = sf_hashtab_to_dict(ht)
+- v_free(v1)
+- v_free(v2)
+- hash_free(ht)
+- return result
++ return _lrcalc_dict_to_sage(lrcalc.mult_fusion(part1, part2, maxrows, level))
++ if maxrows is None:
++ maxrows = -1
++ return _lrcalc_dict_to_sage(lrcalc.mult(part1, part2, maxrows))
+
+ # Otherwise do quantum multiplication
+- cdef _list *qlist
+- cdef dict temp
+- qlist = quantum_reduce_c(ht, int(maxrows), int(level))
+- # The above call frees the memory associated with ht
+- v_free(v1)
+- v_free(v2)
+-
+- cdef Parent P = quantum.parent()
+- result = {}
+- for i in range(qlist.length):
+- tab = <hashtab*>(qlist.array[i])
+- temp = sf_hashtab_to_dict(tab)
+- for k in temp:
+- result[k] = result.get(k, P.zero()) + quantum**i * temp[k]
+- hash_free(tab)
+- l_free(qlist)
+- return result
+-
+-
+-def skew(outer, inner, maxrows=0):
++ result = lrcalc.mult_quantum(part1, part2, maxrows, level, degrees=True)
++ P = quantum.parent()
++ output = {}
++ for i,k in result.items():
++ output[_Partitions(i[0])] = output.get(_Partitions(i[0]), P.zero()) + k*quantum**(i[1])
++ return output
++
++
++def skew(outer, inner, maxrows=-1):
+ """
+ Compute the Schur expansion of a skew Schur function.
+
+@@ -572,14 +376,7 @@ def skew(outer, inner, maxrows=0):
+ sage: sorted(skew([2,1],[1]).items())
+ [([1, 1], 1), ([2], 1)]
+ """
+- cdef vector* v1 = iterable_to_vector(outer)
+- cdef vector* v2 = iterable_to_vector(inner)
+- cdef hashtab* ht = skew_c(v1, v2, int(maxrows))
+- result = sf_hashtab_to_dict(ht)
+- v_free(v1)
+- v_free(v2)
+- hash_free(ht)
+- return result
++ return _lrcalc_dict_to_sage(lrcalc.skew(outer, inner, maxrows))
+
+
+ def coprod(part, all=0):
+@@ -609,12 +406,8 @@ def coprod(part, all=0):
+ sage: sorted(coprod([2,1]).items())
+ [(([1, 1], [1]), 1), (([2], [1]), 1), (([2, 1], []), 1)]
+ """
+- cdef vector* v1 = iterable_to_vector(part)
+- cdef hashtab* ht = coprod_c(v1, int(all))
+- result = vp_hashtab_to_dict(ht)
+- v_free(v1)
+- hash_free(ht)
+- return result
++ result = lrcalc.coprod(part, all)
++ return dict({tuple(_Partitions(j) for j in i):Integer(k) for i,k in result.items()})
+
+
+ def mult_schubert(w1, w2, rank=0):
+@@ -646,17 +439,11 @@ def mult_schubert(w1, w2, rank=0):
+ ([6, 4, 3, 1, 2, 5], 1), ([6, 5, 2, 1, 3, 4], 1),
+ ([7, 3, 4, 1, 2, 5, 6], 1), ([7, 4, 2, 1, 3, 5, 6], 1)]
+ """
+- cdef vector* v1 = iterable_to_vector(w1)
+- cdef vector* v2 = iterable_to_vector(w2)
+- cdef hashtab* ht = mult_schubert_c(v1, v2, int(rank))
+- result = schubert_hashtab_to_dict(ht)
+- v_free(v1)
+- v_free(v2)
+- hash_free(ht)
+- return result
++ result = lrcalc.schubmult(w1, w2, rank)
++ return dict({Permutation(list(i)):Integer(k) for i,k in result.items()})
+
+
+-def lrskew(outer, inner, weight=None, maxrows=0):
++def lrskew(outer, inner, weight=None, maxrows=-1):
+ r"""
+ Iterate over the skew LR tableaux of shape ``outer / inner``.
+
+@@ -703,21 +490,23 @@ def lrskew(outer, inner, weight=None, maxrows=0):
+ sage: list(lrskew([3,2,1],[2], weight=[3,1]))
+ [[[None, None, 1], [1, 1], [2]]]
+ """
+- cdef vector* o = iterable_to_vector(outer)
+- cdef vector* i = iterable_to_vector(inner + [0]*(len(outer) - len(inner)))
+- cdef skewtab* st = st_new(o, i, NULL, int(maxrows))
++ iterator = lrcalc.lr_iterator(outer, inner, maxrows)
++ shape = SkewPartition([outer, inner])
+
+ if weight is None:
+- yield skewtab_to_SkewTableau(st)
+- while st_next(st):
+- yield skewtab_to_SkewTableau(st)
++ while True:
++ try:
++ word = Word([i+1 for i in next(iterator)])
++ yield SkewTableaux().from_shape_and_word(shape, word)
++ except StopIteration:
++ break
+ else:
+ wt = _Partitions(weight)
+- r = skewtab_to_SkewTableau(st)
+- if r.weight() == wt:
+- yield r
+- while st_next(st):
+- r = skewtab_to_SkewTableau(st)
+- if r.weight() == wt:
+- yield r
+- st_free(st)
++ while True:
++ try:
++ word = Word([i+1 for i in next(iterator)])
++ r = SkewTableaux().from_shape_and_word(shape, word)
++ if r.weight() == wt:
++ yield r
++ except StopIteration:
++ break
Copied: sagemath/repos/community-testing-x86_64/sagemath-optional-packages.patch (from rev 1010065, sagemath/trunk/sagemath-optional-packages.patch)
===================================================================
--- community-testing-x86_64/sagemath-optional-packages.patch (rev 0)
+++ community-testing-x86_64/sagemath-optional-packages.patch 2021-08-30 19:33:51 UTC (rev 1010066)
@@ -0,0 +1,17 @@
+diff --git a/build/pkgs/sagelib/src/setup.py b/build/pkgs/sagelib/src/setup.py
+index 0d7c29d746..fb34cbfd5e 100755
+--- a/build/pkgs/sagelib/src/setup.py
++++ b/build/pkgs/sagelib/src/setup.py
+@@ -75,10 +75,9 @@ if sdist:
+ else:
+ distributions = ['']
+ optional_packages_with_extensions = ['mcqd', 'bliss', 'tdlib', 'primecount',
+- 'coxeter3', 'fes', 'sirocco', 'meataxe']
++ 'coxeter3', 'sirocco', 'meataxe']
+ distributions += ['sage-{}'.format(pkg)
+- for pkg in optional_packages_with_extensions
+- if is_package_installed_and_updated(pkg)]
++ for pkg in optional_packages_with_extensions]
+ log.warn('distributions = {0}'.format(distributions))
+
+ from sage_setup.find import find_python_sources
Copied: sagemath/repos/community-testing-x86_64/test-optional.patch (from rev 1010065, sagemath/trunk/test-optional.patch)
===================================================================
--- community-testing-x86_64/test-optional.patch (rev 0)
+++ community-testing-x86_64/test-optional.patch 2021-08-30 19:33:51 UTC (rev 1010066)
@@ -0,0 +1,25 @@
+diff --git a/src/sage/doctest/control.py b/src/sage/doctest/control.py
+index 2d93841e50..937e20cd2e 100644
+--- a/src/sage/doctest/control.py
++++ b/src/sage/doctest/control.py
+@@ -357,20 +357,6 @@ class DocTestController(SageObject):
+ # Special case to run all optional tests
+ options.optional = True
+ else:
+- # We replace the 'optional' tag by all optional
+- # packages for which the installed version matches the
+- # latest available version (this implies in particular
+- # that the package is actually installed).
+- if 'optional' in options.optional:
+- options.optional.discard('optional')
+- from sage.misc.package import list_packages
+- for pkg in list_packages('optional', local=True).values():
+- if pkg['installed'] and pkg['installed_version'] == pkg['remote_version']:
+- options.optional.add(pkg['name'])
+-
+- from sage.features import package_systems
+- options.optional.update(system.name for system in package_systems())
+-
+ # Check that all tags are valid
+ for o in options.optional:
+ if not optionaltag_regex.search(o):
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