[arch-commits] Commit in avogadrolibs/repos (3 files)
Antonio Rojas
arojas at gemini.archlinux.org
Sun May 15 20:51:33 UTC 2022
Date: Sunday, May 15, 2022 @ 20:51:32
Author: arojas
Revision: 445851
archrelease: copy trunk to staging-x86_64
Added:
avogadrolibs/repos/staging-x86_64/
avogadrolibs/repos/staging-x86_64/PKGBUILD
(from rev 445850, avogadrolibs/trunk/PKGBUILD)
avogadrolibs/repos/staging-x86_64/vtk9.patch
(from rev 445850, avogadrolibs/trunk/vtk9.patch)
------------+
PKGBUILD | 62 +++++++++++++++
vtk9.patch | 242 +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++
2 files changed, 304 insertions(+)
Copied: avogadrolibs/repos/staging-x86_64/PKGBUILD (from rev 445850, avogadrolibs/trunk/PKGBUILD)
===================================================================
--- staging-x86_64/PKGBUILD (rev 0)
+++ staging-x86_64/PKGBUILD 2022-05-15 20:51:32 UTC (rev 445851)
@@ -0,0 +1,62 @@
+# Maintainer: Antonio Rojas <arojas at archlinux.org>
+
+pkgbase=avogadrolibs
+pkgname=(avogadrolibs avogadrolibs-qt5)
+pkgver=1.95.1
+pkgrel=8
+pkgdesc='Libraries that provide 3D rendering, visualization, analysis and data processing useful in computational chemistry, molecular modeling, bioinformatics, materials science, and related areas'
+arch=(x86_64)
+url='https://www.openchemistry.org/'
+license=(custom)
+depends=(molequeue glew spglib hdf5 avogadro-molecules avogadro-crystals)
+makedepends=(cmake eigen boost python mmtf-cpp libmsym pybind11 vtk qt5-tools qt5-svg genxrdpattern tbb openmpi)
+optdepends=('avogadrolibs-qt5: For the VTK and Qt plugins')
+source=(https://github.com/OpenChemistry/avogadrolibs/archive/$pkgver/$pkgname-$pkgver.tar.gz
+ vtk9.patch)
+sha256sums=('52817eebfc0cf700e5f6c0c4455b460618ec0dd7cb4ede5d8fabc5a2d73a7816'
+ 'a2272c456f1a5dd85bb98fbf5ed9aa5aabaa3fbd8b191bb6d14e6ee57c2789f4')
+
+prepare() {
+ mkdir crystals molecules # Dummy dirs to trick cmake, actually provided by avogadro-molecules and avogadro-crystals
+ patch -d $pkgname-$pkgver -p1 < vtk9.patch # Fix build with VTK 9
+}
+
+build() {
+ cmake -B build -S $pkgname-$pkgver \
+ -DCMAKE_INSTALL_PREFIX=/usr \
+ -DCMAKE_C_CLAFS="$CFLAGS -ffat-lto-objects" \
+ -DCMAKE_CXX_FLAGS="$CXXFLAGS -ffat-lto-objects" \
+ -DENABLE_TRANSLATIONS=ON \
+ -DUSE_HDF5=ON \
+ -DUSE_VTK=ON \
+ -DUSE_PYTHON=ON \
+ -DUSE_SYSTEM_GENXRDPATTERN=ON
+ cmake --build build
+}
+
+package_avogadrolibs() {
+ DESTDIR="$pkgdir" cmake --install build
+ rm -r "$pkgdir"/usr/lib/libAvogadroQt* \
+ "$pkgdir"/usr/lib/libAvogadroMoleQueue* \
+ "$pkgdir"/usr/lib/libAvogadroVtk* \
+ "$pkgdir"/usr/include/avogadro/{molequeue,qt*,vtk} \
+ "$pkgdir"/usr/lib/avogadro2/{scripts,staticplugins}
+
+ install -Dm644 $pkgname-$pkgver/LICENSE -t "$pkgdir"/usr/share/licenses/$pkgname
+
+# Move python module to the correct place
+ local site_packages=$(python -c "import site; print(site.getsitepackages()[0])")
+ mkdir -p "$pkgdir${site_packages}"
+ mv "$pkgdir"/usr/lib/avogadro "$pkgdir${site_packages}"
+}
+
+package_avogadrolibs-qt5() {
+ pkgdesc="Qt 5 modules for Avogadro"
+ depends=(qt5-svg libarchive libmsym avogadrolibs vtk openmpi fmt libxcursor)
+
+ DESTDIR="$pkgdir" cmake --install build/avogadro/molequeue
+ DESTDIR="$pkgdir" cmake --install build/avogadro/qtgui
+ DESTDIR="$pkgdir" cmake --install build/avogadro/qtopengl
+ DESTDIR="$pkgdir" cmake --install build/avogadro/qtplugins
+ DESTDIR="$pkgdir" cmake --install build/avogadro/vtk
+}
Copied: avogadrolibs/repos/staging-x86_64/vtk9.patch (from rev 445850, avogadrolibs/trunk/vtk9.patch)
===================================================================
--- staging-x86_64/vtk9.patch (rev 0)
+++ staging-x86_64/vtk9.patch 2022-05-15 20:51:32 UTC (rev 445851)
@@ -0,0 +1,242 @@
+diff --git a/avogadro/qtplugins/coloropacitymap/coloropacitymap.cpp b/avogadro/qtplugins/coloropacitymap/coloropacitymap.cpp
+index 2ec4ea3a..ff412948 100644
+--- a/avogadro/qtplugins/coloropacitymap/coloropacitymap.cpp
++++ b/avogadro/qtplugins/coloropacitymap/coloropacitymap.cpp
+@@ -180,7 +180,7 @@ void ColorOpacityMap::render()
+ auto widget = ActiveObjects::instance().activeWidget();
+ auto vtkWidget = qobject_cast<VTK::vtkGLWidget*>(widget);
+ if (vtkWidget) {
+- vtkWidget->GetRenderWindow()->Render();
++ vtkWidget->renderWindow()->Render();
+ vtkWidget->update();
+ }
+ }
+diff --git a/avogadro/qtplugins/coloropacitymap/histogramwidget.cpp b/avogadro/qtplugins/coloropacitymap/histogramwidget.cpp
+index de4c36ad..dc647145 100644
+--- a/avogadro/qtplugins/coloropacitymap/histogramwidget.cpp
++++ b/avogadro/qtplugins/coloropacitymap/histogramwidget.cpp
+@@ -42,8 +42,8 @@ HistogramWidget::HistogramWidget(QWidget* parent)
+ : QWidget(parent), m_qvtk(new QVTKGLWidget(this))
+ {
+ // Set up our little chart.
+- m_histogramView->SetRenderWindow(m_qvtk->GetRenderWindow());
+- m_histogramView->SetInteractor(m_qvtk->GetInteractor());
++ m_histogramView->SetRenderWindow(m_qvtk->renderWindow());
++ m_histogramView->SetInteractor(m_qvtk->interactor());
+ m_histogramView->GetScene()->AddItem(m_histogramColorOpacityEditor);
+
+ // Connect events from the histogram color/opacity editor.
+diff --git a/avogadro/qtplugins/coloropacitymap/qvtkwidget.cpp b/avogadro/qtplugins/coloropacitymap/qvtkwidget.cpp
+index 95afd55c..a8936112 100644
+--- a/avogadro/qtplugins/coloropacitymap/qvtkwidget.cpp
++++ b/avogadro/qtplugins/coloropacitymap/qvtkwidget.cpp
+@@ -12,12 +12,12 @@
+ namespace Avogadro {
+
+ QVTKGLWidget::QVTKGLWidget(QWidget* parent, Qt::WindowFlags f)
+- : QVTKOpenGLWidget(parent, f)
++ : QVTKOpenGLStereoWidget(parent, f)
+ {
+ // Set some defaults for our render window.
+ vtkNew<vtkGenericOpenGLRenderWindow> window;
+- SetRenderWindow(window);
+- auto glFormat = QVTKOpenGLWidget::defaultFormat();
++ setRenderWindow(window);
++ auto glFormat = QVTKOpenGLStereoWidget::defaultFormat();
+ glFormat.setSamples(8);
+ setFormat(glFormat);
+ }
+diff --git a/avogadro/qtplugins/coloropacitymap/qvtkwidget.h b/avogadro/qtplugins/coloropacitymap/qvtkwidget.h
+index a3a6ca42..32d43d4a 100644
+--- a/avogadro/qtplugins/coloropacitymap/qvtkwidget.h
++++ b/avogadro/qtplugins/coloropacitymap/qvtkwidget.h
+@@ -4,11 +4,11 @@
+ #ifndef AVOGADRO_QTPLUGINS_QVTKGLWidget_H
+ #define AVOGADRO_QTPLUGINS_QVTKGLWidget_H
+
+-#include <QVTKOpenGLWidget.h>
++#include <QVTKOpenGLStereoWidget.h>
+
+ namespace Avogadro {
+
+-class QVTKGLWidget : public QVTKOpenGLWidget
++class QVTKGLWidget : public QVTKOpenGLStereoWidget
+ {
+ Q_OBJECT
+
+@@ -17,7 +17,7 @@ class QVTKGLWidget : public QVTKOpenGLWidget
+ Qt::WindowFlags f = Qt::WindowFlags());
+ ~QVTKGLWidget() override;
+
+- void setEnableHiDPI(bool enable) override;
++ void setEnableHiDPI(bool enable);
+ };
+ } // namespace Avogadro
+
+diff --git a/avogadro/vtk/CMakeLists.txt b/avogadro/vtk/CMakeLists.txt
+index 3c567d489..afcf59375 100644
+--- a/avogadro/vtk/CMakeLists.txt
++++ b/avogadro/vtk/CMakeLists.txt
+@@ -11,13 +11,21 @@ endif()
+
+ find_package(Qt5 COMPONENTS Widgets REQUIRED)
+
++find_package(VTK QUIET COMPONENTS CommonCore)
++if(VTK_MAJOR_VERSION GREATER 8)
++ set(VCP "") # shorthand for VTK_COMPONENT_PREFIX
++ set(VMP "VTK::") # shorthand for VTK_MODULE_PREFIX
++else()
++ set(VCP "vtk")
++ set(VMP "vtk")
++ include_directories(SYSTEM ${VTK_INCLUDE_DIRS})
++endif()
++
+ find_package(VTK
+- COMPONENTS
+- vtkRenderingOpenGL2 vtkGUISupportQt vtkDomainsChemistry
+- vtkRenderingVolumeOpenGL2 vtkViewsCore vtkRenderingFreeType
+- vtkChartsCore vtkViewsContext2D vtkRenderingContextOpenGL2
+- REQUIRED)
+-include_directories(SYSTEM ${VTK_INCLUDE_DIRS})
++ REQUIRED COMPONENTS
++ ${VCP}RenderingOpenGL2 ${VCP}GUISupportQt ${VCP}DomainsChemistry
++ ${VCP}RenderingVolumeOpenGL2 ${VCP}ViewsCore ${VCP}RenderingFreeType
++ ${VCP}ChartsCore ${VCP}ViewsContext2D ${VCP}RenderingContextOpenGL2)
+ set_property(DIRECTORY APPEND PROPERTY COMPILE_DEFINITIONS ${VTK_DEFINITIONS})
+
+ set(HEADERS
+@@ -35,6 +43,6 @@ set(SOURCES
+ avogadro_add_library(AvogadroVtk ${HEADERS} ${SOURCES})
+ set_target_properties(AvogadroVtk PROPERTIES AUTOMOC TRUE)
+ target_link_libraries(AvogadroVtk AvogadroRendering AvogadroQtGui
+- vtkRenderingOpenGL2 vtkGUISupportQt vtkRenderingVolumeOpenGL2
+- vtkRenderingFreeType vtkInteractionStyle vtkChartsCore vtkViewsContext2D
+- vtkRenderingContextOpenGL2 vtkDomainsChemistryOpenGL2 Qt5::Widgets)
++ ${VMP}RenderingOpenGL2 ${VMP}GUISupportQt ${VMP}RenderingVolumeOpenGL2
++ ${VMP}RenderingFreeType ${VMP}InteractionStyle ${VMP}ChartsCore ${VMP}ViewsContext2D
++ ${VMP}RenderingContextOpenGL2 ${VMP}DomainsChemistryOpenGL2 Qt5::Widgets)
+diff --git a/avogadro/vtk/vtkglwidget.cpp b/avogadro/vtk/vtkglwidget.cpp
+index 7ce08991..0192a2cf 100644
+--- a/avogadro/vtk/vtkglwidget.cpp
++++ b/avogadro/vtk/vtkglwidget.cpp
+@@ -123,7 +123,7 @@ void vtkGLWidget::cubeVolume(Core::Cube* cube)
+ }
+
+ vtkGLWidget::vtkGLWidget(QWidget* p, Qt::WindowFlags f)
+- : QVTKOpenGLWidget(p, f), m_activeTool(nullptr), m_defaultTool(nullptr)
++ : QVTKOpenGLStereoWidget(p, f), m_activeTool(nullptr), m_defaultTool(nullptr)
+ {
+ setFocusPolicy(Qt::ClickFocus);
+ connect(&m_scenePlugins,
+@@ -131,13 +131,13 @@ vtkGLWidget::vtkGLWidget(QWidget* p, Qt::WindowFlags f)
+ SLOT(updateScene()));
+
+ // Set up our renderer, window, scene, etc.
+- vtkNew<vtkGenericOpenGLRenderWindow> renderWindow;
+- SetRenderWindow(renderWindow);
+- GetRenderWindow()->AddRenderer(m_vtkRenderer);
+- setFormat(QVTKOpenGLWidget::defaultFormat());
+- vtkNew<vtkInteractorStyleTrackballCamera> interactor;
+- GetInteractor()->SetInteractorStyle(interactor);
+- GetInteractor()->Initialize();
++ vtkNew<vtkGenericOpenGLRenderWindow> renderWindow_;
++ setRenderWindow(renderWindow_);
++ renderWindow()->AddRenderer(m_vtkRenderer);
++ setFormat(QVTKOpenGLStereoWidget::defaultFormat());
++ vtkNew<vtkInteractorStyleTrackballCamera> interactor_;
++ interactor()->SetInteractorStyle(interactor_);
++ interactor()->Initialize();
+ m_vtkRenderer->SetBackground(1.0, 1.0, 1.0);
+
+ // m_actor->setScene(&this->renderer().scene());
+@@ -175,7 +175,7 @@ void vtkGLWidget::setMolecule(QtGui::Molecule* mol)
+ updateCube();
+ // Reset the camera, re-render.
+ m_vtkRenderer->ResetCamera();
+- GetRenderWindow()->Render();
++ renderWindow()->Render();
+ }
+
+ void vtkGLWidget::updateCube()
+@@ -205,7 +205,7 @@ void vtkGLWidget::moleculeChanged(unsigned int c)
+ auto changes = static_cast<Molecule::MoleculeChanges>(c);
+ if (changes & Molecule::Added || changes & Molecule::Removed) {
+ updateCube();
+- GetRenderWindow()->Render();
++ renderWindow()->Render();
+ }
+ }
+
+diff --git a/avogadro/vtk/vtkglwidget.h b/avogadro/vtk/vtkglwidget.h
+index 3c3e6046f..93e2e00e8 100644
+--- a/avogadro/vtk/vtkglwidget.h
++++ b/avogadro/vtk/vtkglwidget.h
+@@ -19,7 +19,7 @@
+
+ #include "avogadrovtkexport.h"
+
+-#include <QVTKOpenGLWidget.h>
++#include <QVTKOpenGLStereoWidget.h>
+ #include <vtkNew.h>
+ #include <vtkSmartPointer.h>
+
+@@ -50,7 +50,7 @@ class ToolPlugin;
+
+ namespace VTK {
+
+-class AVOGADROVTK_EXPORT vtkGLWidget : public QVTKOpenGLWidget
++class AVOGADROVTK_EXPORT vtkGLWidget : public QVTKOpenGLStereoWidget
+ {
+ Q_OBJECT
+
+diff --git a/avogadro/vtk/vtkplot.cpp b/avogadro/vtk/vtkplot.cpp
+index c76a5bf6..a0ec8f75 100644
+--- a/avogadro/vtk/vtkplot.cpp
++++ b/avogadro/vtk/vtkplot.cpp
+@@ -34,7 +34,7 @@
+ #include <vtkTextProperty.h>
+
+ #include <QSurfaceFormat>
+-#include <QVTKOpenGLWidget.h>
++#include <QVTKOpenGLStereoWidget.h>
+
+ #include "vtkplot.h"
+
+@@ -45,12 +45,12 @@ using std::vector;
+ namespace Avogadro {
+ namespace VTK {
+
+-VtkPlot::VtkPlot() : m_widget(new QVTKOpenGLWidget)
++VtkPlot::VtkPlot() : m_widget(new QVTKOpenGLStereoWidget)
+ {
+- m_widget->SetRenderWindow(m_renderWindow);
++ m_widget->setRenderWindow(m_renderWindow);
+
+ // Set up the view
+- m_widget->setFormat(QVTKOpenGLWidget::defaultFormat());
++ m_widget->setFormat(QVTKOpenGLStereoWidget::defaultFormat());
+ m_view->SetRenderWindow(m_renderWindow);
+ m_view->GetRenderer()->SetBackground(1.0, 1.0, 1.0);
+ m_view->GetRenderWindow()->SetSize(600, 600);
+diff --git a/avogadro/vtk/vtkplot.h b/avogadro/vtk/vtkplot.h
+index ef2150ac4..a39508376 100644
+--- a/avogadro/vtk/vtkplot.h
++++ b/avogadro/vtk/vtkplot.h
+@@ -26,7 +26,7 @@
+ #include <string>
+ #include <vector>
+
+-class QVTKOpenGLWidget;
++class QVTKOpenGLStereoWidget;
+ class vtkAxis;
+ class vtkChartXY;
+ class vtkContextView;
+@@ -99,7 +99,7 @@ private:
+ // Get a pointer to a particular axis. Returns nullptr if invalid.
+ vtkAxis* getAxis(Axis axis);
+
+- std::unique_ptr<QVTKOpenGLWidget> m_widget;
++ std::unique_ptr<QVTKOpenGLStereoWidget> m_widget;
+ vtkNew<vtkTable> m_table;
+ vtkNew<vtkGenericOpenGLRenderWindow> m_renderWindow;
+ vtkNew<vtkContextView> m_view;
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