[arch-general] [aur-general] GUI apps take time to load after X starts + weird behavior after upgrades

Arno Gaboury arnaud.gaboury at gmail.com
Mon Jul 2 07:12:41 EDT 2012 

On 07/02/2012 01:03 PM, Arno Gaboury wrote:
> On 07/02/2012 12:55 PM, Arno Gaboury wrote:
>> Dear list,
>>
>> my system is no more running smooth after yesterday bunch of 
>> upgrades. The box has very classic and standard settings, and 
>> regularly upgraded.
>>
>> The symptoms:
>> -when login in runlevel 3, the password prompt appears twice
>> -after starx (XFCE4), all my previous open windows (Firefox, 
>> thunderbirds,clementine) take age ( 3-4 mn to display the contents).
>> -Thunderbird return invalid password to mail server, please retry. I 
>> clic on retry, then it starts.
>>
>> I suspects there is a misconfiguration in my new */etc/pam.d/login* 
>> file, and some authentification issues (se below *auth.log*)

*EDIT *: I must add I installed few days ago *polkit*, *libvirt*, and 
*xorg-xauth*, as I want to run KVM and virtual server. The issue could 
well comes from these fresh installs.
>>
>>
>> Please find below my *pacman log:*
>>
>>> [2012-07-01 15:29] Running 'pacman -Syu --ignoregroup texlive-most 
>>> --ignore texlive-bin'
>>> [2012-07-01 15:29] synchronizing package lists
>>> [2012-07-01 15:29] starting full system upgrade
>>> [2012-07-01 15:30] warning: /etc/grub.d/40_custom saved as 
>>> /etc/grub.d/40_custom.pacsave
>>> [2012-07-01 15:30] warning: /etc/default/grub saved as 
>>> /etc/default/grub.pacsave
>>> [2012-07-01 15:30] warning: /boot/grub/grub.cfg saved as 
>>> /boot/grub/grub.cfg.pacsave
>>> [2012-07-01 15:30] removed grub2-common (1:2.00rc1-1)
>>> [2012-07-01 15:30] removed grub2-bios (1:2.00rc1-1)
>>> [2012-07-01 15:30] upgraded run-parts (4.3.1-1 -> 4.3.2-1)
>>> [2012-07-01 15:30] upgraded ca-certificates (20120212-1 -> 20120623-1)
>>> [2012-07-01 15:30] upgraded ca-certificates-java (20120524-1 -> 
>>> 20120608-1)
>>> [2012-07-01 15:30] upgraded chromium (20.0.1132.43-1 -> 20.0.1132.47-1)
>>> [2012-07-01 15:30] upgraded libsystemd (185-3 -> 185-4)
>>> [2012-07-01 15:30] ==> Warning: /etc/group or /etc/gshadow are 
>>> inconsistent.
>>> [2012-07-01 15:30]     Run 'grpck' to correct this.
>>> [2012-07-01 15:30] upgraded shadow (4.1.5-4 -> 4.1.5.1-1)
>>> [2012-07-01 15:30] warning: /etc/pam.d/login installed as 
>>> /etc/pam.d/login.pacnew
>>> [2012-07-01 15:30] upgraded util-linux (2.21.2-1 -> 2.21.2-3)
>>> [2012-07-01 15:30] upgraded systemd-tools (185-3 -> 185-4)
>>> [2012-07-01 15:30] upgraded dbus-core (1.6.0-5 -> 1.6.2-2)
>>> [2012-07-01 15:30] upgraded dbus (1.6.0-1 -> 1.6.2-1)
>>> [2012-07-01 15:30] upgraded docbook-xsl (1.77.0-1 -> 1.77.1-2)
>>> [2012-07-01 15:30] upgraded gcc-libs (4.7.1-1 -> 4.7.1-2)
>>> [2012-07-01 15:30] upgraded ppl (0.12.1-1 -> 1.0-1)
>>> [2012-07-01 15:30] upgraded gcc (4.7.1-1 -> 4.7.1-2)
>>> [2012-07-01 15:30] Copying /boot/grub/grub.cfg.pacsave to 
>>> /boot/grub/grub.cfg
>>> [2012-07-01 15:30] Generating grub.cfg.example config file...
>>> [2012-07-01 15:30] This may fail on some machines running a custom 
>>> kernel.
>>> [2012-07-01 15:30] done.
>>> [2012-07-01 15:30] installed grub-common (2.00-1)
>>> [2012-07-01 15:30] installed grub-bios (2.00-1)
>>> [2012-07-01 15:30] upgraded hyphen (2.8.3-1 -> 2.8.4-1)
>>> [2012-07-01 15:30] upgraded initscripts (2012.06.2-1 -> 2012.06.3-1)
>>> [2012-07-01 15:30] upgraded kdelibs (4.8.4-3 -> 4.8.4-4)
>>> [2012-07-01 15:30] upgraded lib32-gcc-libs (4.7.1-1 -> 4.7.1-2)
>>> [2012-07-01 15:30] upgraded libdrm (2.4.35-1 -> 2.4.37-1)
>>> [2012-07-01 15:30] upgraded libquvi-scripts (0.4.5-1 -> 0.4.6-1)
>>> [2012-07-01 15:30] upgraded libusbx (1.0.12-1 -> 1.0.12-2)
>>> [2012-07-01 15:30] upgraded lynx (2.8.7-5 -> 2.8.7-6)
>>> [2012-07-01 15:30] upgraded pciutils (3.1.9-2 -> 3.1.10-1)
>>> [2012-07-01 15:30] upgraded pixman (0.26.0-1 -> 0.26.2-1)
>>> [2012-07-01 15:30] upgraded raptor (2.0.7-2 -> 2.0.8-1)
>>> [2012-07-01 15:30] upgraded virtuoso (6.1.5-1 -> 6.1.5.20120630-1)
>>> [2012-07-01 15:30] upgraded vlc (2.0.1-2 -> 2.0.2-1)
>>>
>>
>> I am not sure to have merged correctly my */etc/pam.d/login* with the 
>> new login.pacnew
>> Please find below my */etc/pam.d/login*
>>
>>> #%PAM-1.0
>>> auth        required    pam_securetty.so
>>> auth        requisite    pam_nologin.so
>>> auth                include      system-local-login
>>> auth        required    pam_unix.so nullok
>>> auth        required    pam_tally.so onerr=succeed file=/var/log/faillog
>>> # use this to lockout accounts for 10 minutes after 3 failed attempts
>>> #auth        required    pam_tally.so deny=2 unlock_time=600 
>>> onerr=succeed file=/var/log/faillog
>>> account         include      system-local-login
>>> account        required    pam_access.so
>>> account        required    pam_time.so
>>> account        required    pam_unix.so
>>> #password    required    pam_cracklib.so difok=2 minlen=8 dcredit=2 
>>> ocredit=2 retry=3
>>> #password    required    pam_unix.so sha512 shadow use_authtok
>>> session           include      system-local-login
>>> session        required    pam_unix.so
>>> session        required    pam_env.so
>>> session        required    pam_motd.so
>>> session        required    pam_limits.so
>>> session        optional    pam_mail.so dir=/var/spool/mail standard
>>> session        optional    pam_lastlog.so
>>> session        optional    pam_loginuid.so
>>> -session    optional    pam_ck_connector.so nox11
>>> -session    optional    pam_systemd.so
>>
>> Please find below my *errors.log* :
>>> Jul  2 12:34:48 localhost login: pam_mail(login:session): 
>>> pam_putenv: delete non-existent entry; MAIL
>>> Jul  2 12:35:23 localhost /usr/sbin/crond[538]: (CRON) INFO (Syslog 
>>> will be used instead of sendmail.): No such file or directory
>>> Jul  2 12:35:23 localhost kernel: [    5.780491] NOHZ: 
>>> local_softirq_pending 08
>>> Jul  2 12:35:23 localhost kernel: [    5.782694] NOHZ: 
>>> local_softirq_pending 08
>>> Jul  2 12:35:25 localhost dhcpcd[763]: eth0: sendmsg: Cannot assign 
>>> requested address
>>> Jul  2 12:35:54 localhost pulseaudio[1043]: [pulseaudio] 
>>> bluetooth-util.c: org.bluez.Manager.ListAdapters() failed: 
>>> org.freedesktop.DBus.Error.Spawn.ChildExited: Launch helper exited 
>>> with unknown return code 1
>>> Jul  2 12:35:59 localhost pulseaudio[1103]: [pulseaudio] pid.c: 
>>> Daemon already running.
>>
>> Last line form *everything.log* (this line is quite new, didn't 
>> appeared before. Maybe due to my install of *libvrtd*):
>>
>>> Jul  2 12:36:25 localhost dnsmasq[722]: using nameserver 192.168.1.1#53
>>
>> Feom */etc/rc.conf *:
>>
>>> DAEMONS=(ntpd syslog-ng netfs sshd crond dbus networkmanager 
>>> avahi-daemon libvirtd)
>> Nothing special in *kernel.log*.
>>
>> TY for your help.
>>
>> *EDIT* : Please find below *auth.log*. as it seems there is an issue 
>> it it:
>
>> Jul  2 12:33:45 localhost polkitd(authority=local): Operator of 
>> unix-session:/org/freedesktop/ConsoleKit/Session2 successfully 
>> authenticated as unix-user:gabx to gain TEMPORARY authorization for 
>> action org.freedesktop.udisks2.filesystem-mount-system for 
>> system-bus-name::1.14 [/usr/lib/gvfs/gvfs-udisks2-volume-monitor] 
>> (owned by unix-user:gabx)
>> Jul  2 12:34:46 localhost polkitd(authority=local): Unregistered 
>> Authentication Agent for 
>> unix-session:/org/freedesktop/ConsoleKit/Session2 (system bus name 
>> :1.27, object path /org/gnome/PolicyKit1/AuthenticationAgent, locale 
>> en_US.UTF-8) (disconnected from bus)
>> Jul  2 12:34:48 localhost login: pam_unix(login:session): session 
>> closed for user gabx
>> Jul  2 12:34:48 localhost login: pam_unix(login:session): session 
>> closed for user gabx
>> Jul  2 12:34:48 localhost login: pam_mail(login:session): pam_putenv: 
>> delete non-existent entry; MAIL
>> Jul  2 12:34:49 localhost sshd[522]: Received signal 15; terminating.
>> Jul  2 12:35:23 localhost sshd[513]: Server listening on 0.0.0.0 port 
>> 755.
>> Jul  2 12:35:23 localhost sshd[513]: Server listening on :: port 755.
>> Jul  2 12:35:38 localhost login: pam_unix(login:session): session 
>> opened for user gabx by LOGIN(uid=0)
>> Jul  2 12:35:38 localhost login: pam_unix(login:session): session 
>> opened for user gabx by LOGIN(uid=0)
>> Jul  2 12:35:39 localhost login: LOGIN ON tty1 BY gabx
>> Jul  2 12:35:59 localhost polkitd(authority=local): Registered 
>> Authentication Agent for 
>> unix-session:/org/freedesktop/ConsoleKit/Session2 (system bus name 
>> :1.27 [/usr/lib/polkit-gnome/polkit-gnome-authentication-agent-1], 
>> object path /org/gnome/PolicyKit1/AuthenticationAgent, locale 
>> en_US.UTF-8)
>
>

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