[arch-commits] CVS update of extra/science/emboss (PKGBUILD)

Damir Perisa damir at archlinux.org
Tue Feb 19 13:20:46 UTC 2008


    Date: Tuesday, February 19, 2008 @ 08:20:46
  Author: damir
    Path: /home/cvs-extra/extra/science/emboss

Modified: PKGBUILD (1.10 -> 1.11)

upgpkg: emboss 5.0.0-1


----------+
 PKGBUILD |   21 ++++++++++++---------
 1 file changed, 12 insertions(+), 9 deletions(-)


Index: extra/science/emboss/PKGBUILD
diff -u extra/science/emboss/PKGBUILD:1.10 extra/science/emboss/PKGBUILD:1.11
--- extra/science/emboss/PKGBUILD:1.10	Sat Jul 15 11:38:38 2006
+++ extra/science/emboss/PKGBUILD	Tue Feb 19 08:20:46 2008
@@ -1,22 +1,25 @@
-# $Id: PKGBUILD,v 1.10 2006/07/15 15:38:38 andyrtr Exp $
+# $Id: PKGBUILD,v 1.11 2008/02/19 13:20:46 damir Exp $
 # Maintainer: damir <damir at archlinux.org>
 pkgname=emboss
 orgname=EMBOSS
-pkgver=3.0.0
-pkgrel=4
+pkgver=5.0.0
+pkgrel=1
 pkgdesc="A collection of molecular biology applications"
 arch=(i686 x86_64)
 url="http://emboss.sourceforge.net/"
-depends=('gd' 'libx11' 'pcre' 'perl')
-
+depends=('gd' 'libx11' 'pcre' 'perl' 'jre')
+makedepends=('jdk')
+options=("!libtool")
+license=('GPL2')
 source=(ftp://emboss.open-bio.org/pub/EMBOSS/$orgname-$pkgver.tar.gz)
 
 build() {
   cd $startdir/src/$orgname-$pkgver
-  ./configure --prefix=/usr
+  source /etc/profile.d/jdk.sh
+  ./configure --prefix=/usr --enable-large --with-x \
+	--with-javaos=/opt/java/include/linux/ --with-java=/opt/java/
   make || return 1
-  make prefix=$startdir/pkg/usr install
+  make prefix=$startdir/pkg/usr install 
   rm -f $startdir/pkg/usr/include/{pcre,pcreposix}.h
-
-  find $startdir/pkg -name '*.la' -exec rm {} \;
 }
+md5sums=('be4c895220ad34afd65d450ba7d8e34b')




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