[arch-commits] CVS update of extra/science/emboss (PKGBUILD)

[Eric Belanger]

    Date: Tuesday, February 19, 2008 @ 23:49:13
  Author: eric
    Path: /home/cvs-extra/extra/science/emboss

Modified: PKGBUILD (1.11 -> 1.12)

upgpkg: emboss 5.0.0-1
    fixed build issue


----------+
 PKGBUILD |    5 +++--
 1 file changed, 3 insertions(+), 2 deletions(-)


Index: extra/science/emboss/PKGBUILD
diff -u extra/science/emboss/PKGBUILD:1.11 extra/science/emboss/PKGBUILD:1.12
--- extra/science/emboss/PKGBUILD:1.11	Tue Feb 19 08:20:46 2008
+++ extra/science/emboss/PKGBUILD	Tue Feb 19 23:49:12 2008
@@ -1,4 +1,4 @@
-# $Id: PKGBUILD,v 1.11 2008/02/19 13:20:46 damir Exp $
+# $Id: PKGBUILD,v 1.12 2008/02/20 04:49:12 eric Exp $
 # Maintainer: damir <damir at archlinux.org>
 pkgname=emboss
 orgname=EMBOSS
@@ -12,14 +12,15 @@
 options=("!libtool")
 license=('GPL2')
 source=(ftp://emboss.open-bio.org/pub/EMBOSS/$orgname-$pkgver.tar.gz)
+md5sums=('be4c895220ad34afd65d450ba7d8e34b')
 
 build() {
   cd $startdir/src/$orgname-$pkgver
   source /etc/profile.d/jdk.sh
+  CFLAGS="${CFLAGS} -I/opt/java/include"
   ./configure --prefix=/usr --enable-large --with-x \
 	--with-javaos=/opt/java/include/linux/ --with-java=/opt/java/
   make || return 1
   make prefix=$startdir/pkg/usr install 
   rm -f $startdir/pkg/usr/include/{pcre,pcreposix}.h
 }
-md5sums=('be4c895220ad34afd65d450ba7d8e34b')