[arch-commits] Commit in python-biopython/repos (4 files)

[Evgeniy Alekseev]

    Date: Tuesday, March 18, 2014 @ 18:48:27
  Author: arcanis
Revision: 107715

archrelease: copy trunk to community-staging-i686, community-staging-x86_64

Added:
  python-biopython/repos/community-staging-i686/
  python-biopython/repos/community-staging-i686/PKGBUILD
    (from rev 107714, python-biopython/trunk/PKGBUILD)
  python-biopython/repos/community-staging-x86_64/
  python-biopython/repos/community-staging-x86_64/PKGBUILD
    (from rev 107714, python-biopython/trunk/PKGBUILD)

-----------------------------------+
 community-staging-i686/PKGBUILD   |   64 ++++++++++++++++++++++++++++++++++++
 community-staging-x86_64/PKGBUILD |   64 ++++++++++++++++++++++++++++++++++++
 2 files changed, 128 insertions(+)

Copied: python-biopython/repos/community-staging-i686/PKGBUILD (from rev 107714, python-biopython/trunk/PKGBUILD)
===================================================================
--- community-staging-i686/PKGBUILD	                        (rev 0)
+++ community-staging-i686/PKGBUILD	2014-03-18 17:48:27 UTC (rev 107715)
@@ -0,0 +1,64 @@
+# $id$
+# Maintainer: Evgeniy Alekseev <arcanis.arch at gmail dot com>
+# Contributor: Stunts <f.pinamartins at gmail dot com>
+# Contributor: damir <damir at archlinux dot org>
+
+pkgname=('python2-biopython' 'python-biopython')
+_pkgname=biopython
+pkgver=1.63
+pkgrel=3
+pkgdesc="Freely available Python tools for computational molecular biology"
+arch=('i686' 'x86_64')
+url="http://www.biopython.org"
+license=('custom')
+depends=('python2-numpy' 'python-numpy')
+source=(http://www.biopython.org/DIST/${_pkgname}-${pkgver}.tar.gz)
+md5sums=('09c58433150849b131d2d9bbfdf342d3')
+
+prepare() {
+  cp -r "${_pkgname}-${pkgver}" "${_pkgname}-${pkgver}-py2/"
+  
+  cd "${srcdir}/${_pkgname}-${pkgver}-py2/"
+  # change python to python2
+  sed -i "s|python|python2|g" "Bio/bgzf.py"
+  sed -i "s|python|python2|g" "Bio/DocSQL.py"
+  sed -i "s|python|python2|g" "Bio/kNN.py"
+  sed -i "s|python|python2|g" "Bio/LogisticRegression.py"
+  sed -i "s|python|python2|g" "Bio/PDB/parse_pdb_header.py"
+  sed -i "s|python|python2|g" "Bio/PDB/PDBList.py"
+  sed -i "s|python|python2|g" "Bio/Restriction/__init__.py"
+  sed -i "s|python|python2|g" "Bio/Restriction/PrintFormat.py"
+  sed -i "s|python|python2|g" "Bio/Restriction/Restriction.py"
+  sed -i "s|python|python2|g" "Bio/SeqUtils/__init__.py"
+  sed -i "s|python|python2|g" "Bio/UniProt/GOA.py"
+  sed -i "s|python|python2|g" "Bio/Wise/__init__.py"
+  sed -i "s|python|python2|g" "Bio/Wise/dnal.py"
+  sed -i "s|python|python2|g" "Bio/Wise/psw.py"
+}
+
+build() {
+  cd "${srcdir}/${_pkgname}-${pkgver}-py2/"
+  python2 setup.py build
+  
+  cd "${srcdir}/${_pkgname}-${pkgver}/"
+  python setup.py build
+}
+
+package_python2-biopython() {
+  depends=('python2-numpy')
+  optdepends=('python2-reportlab: for pdf graphics code'
+              'mysql-python: for BioSQL module')
+
+  cd "${srcdir}/${_pkgname}-${pkgver}-py2/"
+  python2 setup.py install --root="${pkgdir}"
+  install -Dm644 "LICENSE" "${pkgdir}/usr/share/licenses/${pkgname}/LICENSE"
+}
+
+package_python-biopython() {
+  depends=('python-numpy')
+  
+  cd "${srcdir}/${_pkgname}-${pkgver}/"
+  python setup.py install --root="${pkgdir}"
+  install -Dm644 "LICENSE" "${pkgdir}/usr/share/licenses/${pkgname}/LICENSE"
+}
+

Copied: python-biopython/repos/community-staging-x86_64/PKGBUILD (from rev 107714, python-biopython/trunk/PKGBUILD)
===================================================================
--- community-staging-x86_64/PKGBUILD	                        (rev 0)
+++ community-staging-x86_64/PKGBUILD	2014-03-18 17:48:27 UTC (rev 107715)
@@ -0,0 +1,64 @@
+# $id$
+# Maintainer: Evgeniy Alekseev <arcanis.arch at gmail dot com>
+# Contributor: Stunts <f.pinamartins at gmail dot com>
+# Contributor: damir <damir at archlinux dot org>
+
+pkgname=('python2-biopython' 'python-biopython')
+_pkgname=biopython
+pkgver=1.63
+pkgrel=3
+pkgdesc="Freely available Python tools for computational molecular biology"
+arch=('i686' 'x86_64')
+url="http://www.biopython.org"
+license=('custom')
+depends=('python2-numpy' 'python-numpy')
+source=(http://www.biopython.org/DIST/${_pkgname}-${pkgver}.tar.gz)
+md5sums=('09c58433150849b131d2d9bbfdf342d3')
+
+prepare() {
+  cp -r "${_pkgname}-${pkgver}" "${_pkgname}-${pkgver}-py2/"
+  
+  cd "${srcdir}/${_pkgname}-${pkgver}-py2/"
+  # change python to python2
+  sed -i "s|python|python2|g" "Bio/bgzf.py"
+  sed -i "s|python|python2|g" "Bio/DocSQL.py"
+  sed -i "s|python|python2|g" "Bio/kNN.py"
+  sed -i "s|python|python2|g" "Bio/LogisticRegression.py"
+  sed -i "s|python|python2|g" "Bio/PDB/parse_pdb_header.py"
+  sed -i "s|python|python2|g" "Bio/PDB/PDBList.py"
+  sed -i "s|python|python2|g" "Bio/Restriction/__init__.py"
+  sed -i "s|python|python2|g" "Bio/Restriction/PrintFormat.py"
+  sed -i "s|python|python2|g" "Bio/Restriction/Restriction.py"
+  sed -i "s|python|python2|g" "Bio/SeqUtils/__init__.py"
+  sed -i "s|python|python2|g" "Bio/UniProt/GOA.py"
+  sed -i "s|python|python2|g" "Bio/Wise/__init__.py"
+  sed -i "s|python|python2|g" "Bio/Wise/dnal.py"
+  sed -i "s|python|python2|g" "Bio/Wise/psw.py"
+}
+
+build() {
+  cd "${srcdir}/${_pkgname}-${pkgver}-py2/"
+  python2 setup.py build
+  
+  cd "${srcdir}/${_pkgname}-${pkgver}/"
+  python setup.py build
+}
+
+package_python2-biopython() {
+  depends=('python2-numpy')
+  optdepends=('python2-reportlab: for pdf graphics code'
+              'mysql-python: for BioSQL module')
+
+  cd "${srcdir}/${_pkgname}-${pkgver}-py2/"
+  python2 setup.py install --root="${pkgdir}"
+  install -Dm644 "LICENSE" "${pkgdir}/usr/share/licenses/${pkgname}/LICENSE"
+}
+
+package_python-biopython() {
+  depends=('python-numpy')
+  
+  cd "${srcdir}/${_pkgname}-${pkgver}/"
+  python setup.py install --root="${pkgdir}"
+  install -Dm644 "LICENSE" "${pkgdir}/usr/share/licenses/${pkgname}/LICENSE"
+}
+