[arch-commits] Commit in python-biopython/repos (4 files)
Evgeniy Alekseev
arcanis at nymeria.archlinux.org
Tue Mar 18 17:59:58 UTC 2014
Date: Tuesday, March 18, 2014 @ 18:59:58
Author: arcanis
Revision: 107717
archrelease: copy trunk to community-staging-i686, community-staging-x86_64
Added:
python-biopython/repos/community-staging-i686/PKGBUILD
(from rev 107716, python-biopython/trunk/PKGBUILD)
python-biopython/repos/community-staging-x86_64/PKGBUILD
(from rev 107716, python-biopython/trunk/PKGBUILD)
Deleted:
python-biopython/repos/community-staging-i686/PKGBUILD
python-biopython/repos/community-staging-x86_64/PKGBUILD
-----------------------------------+
/PKGBUILD | 56 +++++++++++++++++++++++++++++++
community-staging-i686/PKGBUILD | 64 ------------------------------------
community-staging-x86_64/PKGBUILD | 64 ------------------------------------
3 files changed, 56 insertions(+), 128 deletions(-)
Deleted: community-staging-i686/PKGBUILD
===================================================================
--- community-staging-i686/PKGBUILD 2014-03-18 17:59:42 UTC (rev 107716)
+++ community-staging-i686/PKGBUILD 2014-03-18 17:59:58 UTC (rev 107717)
@@ -1,64 +0,0 @@
-# $id$
-# Maintainer: Evgeniy Alekseev <arcanis.arch at gmail dot com>
-# Contributor: Stunts <f.pinamartins at gmail dot com>
-# Contributor: damir <damir at archlinux dot org>
-
-pkgname=('python2-biopython' 'python-biopython')
-_pkgname=biopython
-pkgver=1.63
-pkgrel=3
-pkgdesc="Freely available Python tools for computational molecular biology"
-arch=('i686' 'x86_64')
-url="http://www.biopython.org"
-license=('custom')
-depends=('python2-numpy' 'python-numpy')
-source=(http://www.biopython.org/DIST/${_pkgname}-${pkgver}.tar.gz)
-md5sums=('09c58433150849b131d2d9bbfdf342d3')
-
-prepare() {
- cp -r "${_pkgname}-${pkgver}" "${_pkgname}-${pkgver}-py2/"
-
- cd "${srcdir}/${_pkgname}-${pkgver}-py2/"
- # change python to python2
- sed -i "s|python|python2|g" "Bio/bgzf.py"
- sed -i "s|python|python2|g" "Bio/DocSQL.py"
- sed -i "s|python|python2|g" "Bio/kNN.py"
- sed -i "s|python|python2|g" "Bio/LogisticRegression.py"
- sed -i "s|python|python2|g" "Bio/PDB/parse_pdb_header.py"
- sed -i "s|python|python2|g" "Bio/PDB/PDBList.py"
- sed -i "s|python|python2|g" "Bio/Restriction/__init__.py"
- sed -i "s|python|python2|g" "Bio/Restriction/PrintFormat.py"
- sed -i "s|python|python2|g" "Bio/Restriction/Restriction.py"
- sed -i "s|python|python2|g" "Bio/SeqUtils/__init__.py"
- sed -i "s|python|python2|g" "Bio/UniProt/GOA.py"
- sed -i "s|python|python2|g" "Bio/Wise/__init__.py"
- sed -i "s|python|python2|g" "Bio/Wise/dnal.py"
- sed -i "s|python|python2|g" "Bio/Wise/psw.py"
-}
-
-build() {
- cd "${srcdir}/${_pkgname}-${pkgver}-py2/"
- python2 setup.py build
-
- cd "${srcdir}/${_pkgname}-${pkgver}/"
- python setup.py build
-}
-
-package_python2-biopython() {
- depends=('python2-numpy')
- optdepends=('python2-reportlab: for pdf graphics code'
- 'mysql-python: for BioSQL module')
-
- cd "${srcdir}/${_pkgname}-${pkgver}-py2/"
- python2 setup.py install --root="${pkgdir}"
- install -Dm644 "LICENSE" "${pkgdir}/usr/share/licenses/${pkgname}/LICENSE"
-}
-
-package_python-biopython() {
- depends=('python-numpy')
-
- cd "${srcdir}/${_pkgname}-${pkgver}/"
- python setup.py install --root="${pkgdir}"
- install -Dm644 "LICENSE" "${pkgdir}/usr/share/licenses/${pkgname}/LICENSE"
-}
-
Copied: python-biopython/repos/community-staging-i686/PKGBUILD (from rev 107716, python-biopython/trunk/PKGBUILD)
===================================================================
--- community-staging-i686/PKGBUILD (rev 0)
+++ community-staging-i686/PKGBUILD 2014-03-18 17:59:58 UTC (rev 107717)
@@ -0,0 +1,28 @@
+# $id$
+# Maintainer: Evgeniy Alekseev <arcanis.arch at gmail dot com>
+# Contributor: Stunts <f.pinamartins at gmail dot com>
+# Contributor: damir <damir at archlinux dot org>
+
+pkgname=python-biopython
+_pkgname=biopython
+pkgver=1.63
+pkgrel=3
+pkgdesc="Freely available Python tools for computational molecular biology"
+arch=('i686' 'x86_64')
+url="http://www.biopython.org"
+license=('custom')
+depends=('python-numpy')
+source=(http://www.biopython.org/DIST/${_pkgname}-${pkgver}.tar.gz)
+md5sums=('09c58433150849b131d2d9bbfdf342d3')
+
+build() {
+ cd "${srcdir}/${_pkgname}-${pkgver}/"
+ python setup.py build
+}
+
+package() {
+ cd "${srcdir}/${_pkgname}-${pkgver}/"
+ python setup.py install --root="${pkgdir}"
+ install -Dm644 "LICENSE" "${pkgdir}/usr/share/licenses/${pkgname}/LICENSE"
+}
+
Deleted: community-staging-x86_64/PKGBUILD
===================================================================
--- community-staging-x86_64/PKGBUILD 2014-03-18 17:59:42 UTC (rev 107716)
+++ community-staging-x86_64/PKGBUILD 2014-03-18 17:59:58 UTC (rev 107717)
@@ -1,64 +0,0 @@
-# $id$
-# Maintainer: Evgeniy Alekseev <arcanis.arch at gmail dot com>
-# Contributor: Stunts <f.pinamartins at gmail dot com>
-# Contributor: damir <damir at archlinux dot org>
-
-pkgname=('python2-biopython' 'python-biopython')
-_pkgname=biopython
-pkgver=1.63
-pkgrel=3
-pkgdesc="Freely available Python tools for computational molecular biology"
-arch=('i686' 'x86_64')
-url="http://www.biopython.org"
-license=('custom')
-depends=('python2-numpy' 'python-numpy')
-source=(http://www.biopython.org/DIST/${_pkgname}-${pkgver}.tar.gz)
-md5sums=('09c58433150849b131d2d9bbfdf342d3')
-
-prepare() {
- cp -r "${_pkgname}-${pkgver}" "${_pkgname}-${pkgver}-py2/"
-
- cd "${srcdir}/${_pkgname}-${pkgver}-py2/"
- # change python to python2
- sed -i "s|python|python2|g" "Bio/bgzf.py"
- sed -i "s|python|python2|g" "Bio/DocSQL.py"
- sed -i "s|python|python2|g" "Bio/kNN.py"
- sed -i "s|python|python2|g" "Bio/LogisticRegression.py"
- sed -i "s|python|python2|g" "Bio/PDB/parse_pdb_header.py"
- sed -i "s|python|python2|g" "Bio/PDB/PDBList.py"
- sed -i "s|python|python2|g" "Bio/Restriction/__init__.py"
- sed -i "s|python|python2|g" "Bio/Restriction/PrintFormat.py"
- sed -i "s|python|python2|g" "Bio/Restriction/Restriction.py"
- sed -i "s|python|python2|g" "Bio/SeqUtils/__init__.py"
- sed -i "s|python|python2|g" "Bio/UniProt/GOA.py"
- sed -i "s|python|python2|g" "Bio/Wise/__init__.py"
- sed -i "s|python|python2|g" "Bio/Wise/dnal.py"
- sed -i "s|python|python2|g" "Bio/Wise/psw.py"
-}
-
-build() {
- cd "${srcdir}/${_pkgname}-${pkgver}-py2/"
- python2 setup.py build
-
- cd "${srcdir}/${_pkgname}-${pkgver}/"
- python setup.py build
-}
-
-package_python2-biopython() {
- depends=('python2-numpy')
- optdepends=('python2-reportlab: for pdf graphics code'
- 'mysql-python: for BioSQL module')
-
- cd "${srcdir}/${_pkgname}-${pkgver}-py2/"
- python2 setup.py install --root="${pkgdir}"
- install -Dm644 "LICENSE" "${pkgdir}/usr/share/licenses/${pkgname}/LICENSE"
-}
-
-package_python-biopython() {
- depends=('python-numpy')
-
- cd "${srcdir}/${_pkgname}-${pkgver}/"
- python setup.py install --root="${pkgdir}"
- install -Dm644 "LICENSE" "${pkgdir}/usr/share/licenses/${pkgname}/LICENSE"
-}
-
Copied: python-biopython/repos/community-staging-x86_64/PKGBUILD (from rev 107716, python-biopython/trunk/PKGBUILD)
===================================================================
--- community-staging-x86_64/PKGBUILD (rev 0)
+++ community-staging-x86_64/PKGBUILD 2014-03-18 17:59:58 UTC (rev 107717)
@@ -0,0 +1,28 @@
+# $id$
+# Maintainer: Evgeniy Alekseev <arcanis.arch at gmail dot com>
+# Contributor: Stunts <f.pinamartins at gmail dot com>
+# Contributor: damir <damir at archlinux dot org>
+
+pkgname=python-biopython
+_pkgname=biopython
+pkgver=1.63
+pkgrel=3
+pkgdesc="Freely available Python tools for computational molecular biology"
+arch=('i686' 'x86_64')
+url="http://www.biopython.org"
+license=('custom')
+depends=('python-numpy')
+source=(http://www.biopython.org/DIST/${_pkgname}-${pkgver}.tar.gz)
+md5sums=('09c58433150849b131d2d9bbfdf342d3')
+
+build() {
+ cd "${srcdir}/${_pkgname}-${pkgver}/"
+ python setup.py build
+}
+
+package() {
+ cd "${srcdir}/${_pkgname}-${pkgver}/"
+ python setup.py install --root="${pkgdir}"
+ install -Dm644 "LICENSE" "${pkgdir}/usr/share/licenses/${pkgname}/LICENSE"
+}
+
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