[arch-general] rpmdb: PANIC

Ralf Mardorf ralf.mardorf at alice-dsl.net
Sat Mar 16 11:08:47 EDT 2013 

For this update [1] I got the PANIC the first time. If I install and
remove leafpad, as a test, everything is ok. If I re-install linux, I
get the PANIC messages too.

Is DKMS broken? I need it to build Vbox modules for linux-rt.

Regards,
Ralf

[1]
[root at archlinux rocketmouse]# pacman -Syu
:: Synchronizing package databases...
 core                                      105.1 KiB   501K/s 00:00
[######################################] 100%
 extra is up to date
 community                                1938.1 KiB   583K/s 00:03
[######################################] 100%
 multilib is up to date
:: Starting full system upgrade...
resolving dependencies...
looking for inter-conflicts...

Targets (7): acpid-2.0.18-2  gettext-0.18.2.1-1  gpgme-1.3.2-1
libassuan-2.1.0-1  virtualbox-4.2.10-1
             virtualbox-host-dkms-4.2.10-1
virtualbox-host-modules-4.2.10-1

Total Download Size:    16.67 MiB
Total Installed Size:   90.00 MiB
Net Upgrade Size:       -5.97 MiB

Proceed with installation? [Y/n] 
:: Retrieving packages from core...
 gettext-0.18.2.1-1-x86_64                   2.1 MiB   582K/s 00:04
[######################################] 100%
 gpgme-1.3.2-1-x86_64                      197.8 KiB   593K/s 00:00
[######################################] 100%
 libassuan-2.1.0-1-x86_64                   77.8 KiB   599K/s 00:00
[######################################] 100%
:: Retrieving packages from community...
 acpid-2.0.18-2-x86_64                      44.0 KiB   613K/s 00:00
[######################################] 100%
 virtualbox-host-dkms-4.2.10-1-x86_64      483.0 KiB   589K/s 00:01
[######################################] 100%
 virtualbox-host-modules-4.2.10-1-x86_64   157.1 KiB   591K/s 00:00
[######################################] 100%
 virtualbox-4.2.10-1-x86_64                 13.7 MiB   586K/s 00:24
[######################################] 100%
(7/7) checking package integrity
[######################################] 100%
(7/7) loading package files
[######################################] 100%
(7/7) checking for file conflicts
[######################################] 100%
(7/7) checking available disk space
[######################################] 100%
(1/7) upgrading acpid
[######################################] 100%
(2/7) upgrading gettext
[######################################] 100%
(3/7) upgrading gpgme
[######################################] 100%
(4/7) upgrading libassuan
[######################################] 100%
rpmdb: /var/lib/rpm/./log: No such file or directory
rpmdb: PANIC: No such file or directory
==> rpmdbe_event_notify(0x1cbb870, PANIC(0), 0x7fffb2b09f5c) app_private
(nil)
rpmdb: unable to join the environment
error: db_init:db3.c:1009: dbenv->open(-30973): DB_RUNRECOVERY: Fatal
error, run database recovery
rpmdb: /var/lib/rpm/./log: No such file or directory
rpmdb: PANIC: No such file or directory
==> rpmdbe_event_notify(0x1cbb870, PANIC(0), 0x7fffb2b09f5c) app_private
(nil)
rpmdb: unable to join the environment
error: db_init:db3.c:1009: dbenv->open(-30973): DB_RUNRECOVERY: Fatal
error, run database recovery
rpmdb: /var/lib/rpm/./log: No such file or directory
rpmdb: PANIC: No such file or directory
==> rpmdbe_event_notify(0x2581870, PANIC(0), 0x7fff646adabc) app_private
(nil)
rpmdb: unable to join the environment
error: db_init:db3.c:1009: dbenv->open(-30973): DB_RUNRECOVERY: Fatal
error, run database recovery
rpmdb: /var/lib/rpm/./log: No such file or directory
rpmdb: PANIC: No such file or directory
==> rpmdbe_event_notify(0x2581870, PANIC(0), 0x7fff646adabc) app_private
(nil)
rpmdb: unable to join the environment
error: db_init:db3.c:1009: dbenv->open(-30973): DB_RUNRECOVERY: Fatal
error, run database recovery
rpmdb: /var/lib/rpm/./log: No such file or directory
rpmdb: PANIC: No such file or directory
==> rpmdbe_event_notify(0x8f8870, PANIC(0), 0x7fff7f35695c) app_private
(nil)
rpmdb: unable to join the environment
error: db_init:db3.c:1009: dbenv->open(-30973): DB_RUNRECOVERY: Fatal
error, run database recovery
rpmdb: /var/lib/rpm/./log: No such file or directory
rpmdb: PANIC: No such file or directory
==> rpmdbe_event_notify(0x8f8870, PANIC(0), 0x7fff7f35695c) app_private
(nil)
rpmdb: unable to join the environment
error: db_init:db3.c:1009: dbenv->open(-30973): DB_RUNRECOVERY: Fatal
error, run database recovery
rpmdb: /var/lib/rpm/./log: No such file or directory
rpmdb: PANIC: No such file or directory
==> rpmdbe_event_notify(0xd0a870, PANIC(0), 0x7fff24fbcd8c) app_private
(nil)
rpmdb: unable to join the environment
error: db_init:db3.c:1009: dbenv->open(-30973): DB_RUNRECOVERY: Fatal
error, run database recovery
rpmdb: /var/lib/rpm/./log: No such file or directory
rpmdb: PANIC: No such file or directory
==> rpmdbe_event_notify(0xd0a870, PANIC(0), 0x7fff24fbcd8c) app_private
(nil)
rpmdb: unable to join the environment
error: db_init:db3.c:1009: dbenv->open(-30973): DB_RUNRECOVERY: Fatal
error, run database recovery
/usr/sbin/dkms: line 1873: echo: write error: Broken pipe
/usr/sbin/dkms: line 1875: echo: write error: Broken pipe
/usr/sbin/dkms: line 1873: echo: write error: Broken pipe
/usr/sbin/dkms: line 1875: echo: write error: Broken pipe
/usr/sbin/dkms: line 1873: echo: write error: Broken pipe
/usr/sbin/dkms: line 1875: echo: write error: Broken pipe
/usr/sbin/dkms: line 1873: echo: write error: Broken pipe
/usr/sbin/dkms: line 1875: echo: write error: Broken pipe
(5/7) upgrading virtualbox-host-dkms
[######################################] 100%
warning: directory permissions differ on usr/src/
filesystem: 775  package: 755
rpmdb: /var/lib/rpm/./log: No such file or directory
rpmdb: PANIC: No such file or directory
==> rpmdbe_event_notify(0x11b0870, PANIC(0), 0x7fffc320044c) app_private
(nil)
rpmdb: unable to join the environment
error: db_init:db3.c:1009: dbenv->open(-30973): DB_RUNRECOVERY: Fatal
error, run database recovery
rpmdb: /var/lib/rpm/./log: No such file or directory
rpmdb: PANIC: No such file or directory
==> rpmdbe_event_notify(0x11b0870, PANIC(0), 0x7fffc320044c) app_private
(nil)
rpmdb: unable to join the environment
error: db_init:db3.c:1009: dbenv->open(-30973): DB_RUNRECOVERY: Fatal
error, run database recovery
rpmdb: /var/lib/rpm/./log: No such file or directory
rpmdb: PANIC: No such file or directory
==> rpmdbe_event_notify(0x1aac870, PANIC(0), 0x7fffb5e04d0c) app_private
(nil)
rpmdb: unable to join the environment
error: db_init:db3.c:1009: dbenv->open(-30973): DB_RUNRECOVERY: Fatal
error, run database recovery
rpmdb: /var/lib/rpm/./log: No such file or directory
rpmdb: PANIC: No such file or directory
==> rpmdbe_event_notify(0x1aac870, PANIC(0), 0x7fffb5e04d0c) app_private
(nil)
rpmdb: unable to join the environment
error: db_init:db3.c:1009: dbenv->open(-30973): DB_RUNRECOVERY: Fatal
error, run database recovery
rpmdb: /var/lib/rpm/./log: No such file or directory
rpmdb: PANIC: No such file or directory
==> rpmdbe_event_notify(0xb87870, PANIC(0), 0x7fff5224972c) app_private
(nil)
rpmdb: unable to join the environment
error: db_init:db3.c:1009: dbenv->open(-30973): DB_RUNRECOVERY: Fatal
error, run database recovery
rpmdb: /var/lib/rpm/./log: No such file or directory
rpmdb: PANIC: No such file or directory
==> rpmdbe_event_notify(0xb87870, PANIC(0), 0x7fff5224972c) app_private
(nil)
rpmdb: unable to join the environment
error: db_init:db3.c:1009: dbenv->open(-30973): DB_RUNRECOVERY: Fatal
error, run database recovery
rpmdb: /var/lib/rpm/./log: No such file or directory
rpmdb: PANIC: No such file or directory
==> rpmdbe_event_notify(0x1613870, PANIC(0), 0x7fff092c465c) app_private
(nil)
rpmdb: unable to join the environment
error: db_init:db3.c:1009: dbenv->open(-30973): DB_RUNRECOVERY: Fatal
error, run database recovery
rpmdb: /var/lib/rpm/./log: No such file or directory
rpmdb: PANIC: No such file or directory
==> rpmdbe_event_notify(0x1613870, PANIC(0), 0x7fff092c465c) app_private
(nil)
rpmdb: unable to join the environment
error: db_init:db3.c:1009: dbenv->open(-30973): DB_RUNRECOVERY: Fatal
error, run database recovery

Creating symlink /var/lib/dkms/vboxhost/4.2.10/source ->
                 /usr/src/vboxhost-4.2.10

DKMS: add completed.
==> To build and install your modules run: dkms install vboxhost/4.2.10
==> To do this automatically at startup run: systemctl enable
dkms.service
(6/7) upgrading virtualbox-host-modules
[######################################] 100%
In order to use the new version, reload all virtualbox modules manually.
(7/7) upgrading virtualbox
[######################################] 100%

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